| prototheca zopfii var. portoricensis | 1 | varietas | plants | | 283961 |
| campanulotes bidentatus compar | 5 | subspecies | invertebrates | | 135595 |
| entodinium furca dilobum | -3 | subspecies | invertebrates | protozoa | 358011 |
| entodinium furca monolobum | 1 | subspecies | invertebrates | protozoa | 358012 |
| epidinium ecaudatum fasciculus | -3 | subspecies | invertebrates | protozoa | 358020 |
| anoplodinium denticulatum monacanthum | -3 | subspecies | invertebrates | protozoa | 358028 |
| anoplodinium denticulatum denticulatum | -3 | subspecies | invertebrates | protozoa | 358029 |
| epidinium ecaudatum caudatum | 5 | subspecies | invertebrates | protozoa | 358032 |
| echinococcus multilocularis multilocularis | 1 | subspecies | | helminths | |
| echinococcus multilocularis sibiricencis | -3 | subspecies | | helminths | |
| agrobacterium tumefaciens | 155 | species | bacteria | bacteria | 358 |
| raoultella terrigena | 16 | species | bacteria | bacteria | 577 |
| serratia liquefaciens | 54 | species | bacteria | bacteria | 614 |
| butyrivibrio fibrisolvens | 49 | species | bacteria | bacteria | 831 |
| megasphaera elsdenii | 44 | species | bacteria | bacteria | 907 |
| selenomonas ruminantium | 41 | species | bacteria | bacteria | 971 |
| leuconostoc fallax | 10 | species | bacteria | bacteria | 1251 |
| ruminococcus flavefaciens | 44 | species | bacteria | bacteria | 1265 |
| micrococcus luteus | 82 | species | bacteria | bacteria | 1270 |
| staphylococcus simulans | 30 | species | bacteria | bacteria | 1286 |
| staphylococcus hominis | 23 | species | bacteria | bacteria | 1290 |
| staphylococcus sciuri | 28 | species | bacteria | bacteria | 1296 |
| streptococcus oralis | 43 | species | bacteria | bacteria | 1303 |
| streptococcus parasanguinis | 28 | species | bacteria | bacteria | 1318 |
| streptococcus porcinus | 8 | species | bacteria | bacteria | 1340 |
| lactococcus lactis | 120 | species | bacteria | bacteria | 1358 |
| marinococcus halophilus | 12 | species | bacteria | bacteria | 1371 |
| gemella haemolysans | 15 | species | bacteria | bacteria | 1379 |
| clostridium cadaveris | 5 | species | bacteria | bacteria | 1529 |
| lactobacillus acidophilus | 95 | species | bacteria | bacteria | 1579 |
| lactobacillus casei | 97 | species | bacteria | bacteria | 1582 |
| weissella confusa | 18 | species | bacteria | bacteria | 1583 |
| lactobacillus helveticus | 64 | species | bacteria | bacteria | 1587 |
| lactobacillus plantarum | 92 | species | bacteria | bacteria | 1590 |
| lactobacillus gasseri | 37 | species | bacteria | bacteria | 1596 |
| lactobacillus paracasei | 44 | species | bacteria | bacteria | 1597 |
| lactobacillus fermentum | 47 | species | bacteria | bacteria | 1613 |
| lactobacillus salivarius | 36 | species | bacteria | bacteria | 1624 |
| lactobacillus oris | 7 | species | bacteria | bacteria | 1632 |
| listeria innocua | 58 | species | bacteria | bacteria | 1642 |
| bifidobacterium bifidum | 53 | species | bacteria | bacteria | 1681 |
| bifidobacterium breve | 39 | species | bacteria | bacteria | 1685 |
| bifidobacterium catenulatum | 14 | species | bacteria | bacteria | 1686 |
| mycobacterium cookii | 4 | species | bacteria | bacteria | 1775 |
| mycobacterium flavescens | 12 | species | bacteria | bacteria | 1776 |
| mycobacterium terrae | 20 | species | bacteria | bacteria | 1788 |
| nocardiopsis dassonvillei | 11 | species | bacteria | bacteria | 2014 |
| rothia dentocariosa | 19 | species | bacteria | bacteria | 2047 |
| acholeplasma laidlawii | 67 | species | bacteria | bacteria | 2148 |
| debaryomyces hansenii | 46 | species | plants | fungi | 4959 |
| sporidiobolus salmonicolor | 26 | species | plants | fungi | 5005 |
| aspergillus amstelodami | 23 | species | plants | fungi | 5054 |
| aspergillus flavus | 81 | species | plants | fungi | 5059 |
| aspergillus tubingensis | 22 | species | plants | fungi | 5068 |
| thermoascus crustaceus | 4 | species | plants | fungi | 5088 |
| sporothrix stenoceras | 8 | species | plants | fungi | 5173 |
| papiliotrema laurentii | 32 | species | plants | fungi | 5418 |
| colletotrichum truncatum | 23 | species | plants | fungi | 5467 |
| sterigmatomyces halophilus | 3 | species | plants | fungi | 5617 |
| trypanosoma lewisi | 30 | species | invertebrates | protozoa | 5695 |
| trypanosoma rangeli | 28 | species | invertebrates | protozoa | 5698 |
| tritrichomonas muris | 7 | species | invertebrates | protozoa | 5726 |
| tetramitus rostratus | 9 | species | invertebrates | protozoa | 5769 |
| sarcocystis muris | 28 | species | invertebrates | protozoa | 5813 |
| isotricha prostoma | 15 | species | invertebrates | protozoa | 5987 |
| hirudo medicinalis | 58 | species | invertebrates | | 6421 |
| porocephalus crotali | 8 | species | invertebrates | | 7567 |
| murid herpesvirus 1 | 105 | species | viruses | viruses | 10366 |
| adeno-associated virus - 2 | 79 | species | viruses | viruses | 10804 |
| semliki forest virus | 119 | species | viruses | viruses | 11033 |
| sindbis virus | 107 | species | viruses | viruses | 11034 |
| simian foamy virus | 30 | species | viruses | viruses | 11642 |
| pepper mild mottle virus | 16 | species | viruses | viruses | 12239 |
| syncephalastrum racemosum | 15 | species | plants | fungi | 13706 |
| bifidobacterium animalis | 32 | species | bacteria | bacteria | 28025 |
| murid herpesvirus 2 | 28 | species | viruses | viruses | 28304 |
| acanthamoeba lenticulata | 6 | species | invertebrates | protozoa | 29196 |
| trichomonas vaginalis virus | 16 | species | viruses | viruses | 29256 |
| staphylococcus capitis | 20 | species | bacteria | bacteria | 29388 |
| aspergillus terreus | 55 | species | plants | fungi | 33178 |
| bifidobacterium thermophilum | 12 | species | bacteria | bacteria | 33905 |
| leuconostoc citreum | 21 | species | bacteria | bacteria | 33964 |
| paracoccus aminovorans | 1 | species | bacteria | bacteria | 34004 |
| babesia odocoilei | 14 | species | invertebrates | protozoa | 36766 |
| talaromyces marneffei | 43 | species | plants | fungi | 37727 |
| pneumocystis wakefieldiae | 5 | species | plants | fungi | 38082 |
| entamoeba gingivalis | 8 | species | invertebrates | protozoa | 38877 |
| cellvibrio mixtus | 13 | species | bacteria | bacteria | 39650 |
| mycobacterium austroafricanum | 16 | species | bacteria | bacteria | 39687 |
| neurospora sitophila | 11 | species | plants | fungi | 40126 |
| aspergillus ochraceus | 42 | species | plants | fungi | 40380 |
| aspergillus unguis | 4 | species | plants | fungi | 40381 |
| aspergillus ustus | 23 | species | plants | fungi | 40382 |
| dasytricha ruminantium | 19 | species | invertebrates | protozoa | 40806 |
| entodinium simplex | 9 | species | invertebrates | protozoa | 40807 |
| aspergillus carbonarius | 26 | species | plants | fungi | 40993 |
| entamoeba moshkovskii | 15 | species | invertebrates | protozoa | 41668 |
| aspergillus rugulosus | 2 | species | plants | fungi | 41736 |
| aspergillus kanagawaensis | 3 | species | plants | fungi | 41751 |
| aspergillus penicillioides | 9 | species | plants | fungi | 41959 |