| onchocerca sweetae | 1 | species | | helminths | |
| multiceps longihamatus | 1 | species | | helminths | |
| meningonema peruzii | 1 | species | | helminths | |
| lanjan virus | 1 | species | | viruses | 1564119 |
| diphyllobothrium elegans | 1 | species | | helminths | |
| dipetalonema marmosetae | 1 | species | | helminths | |
| echinostoma ilocanum | 1 | species | | helminths | |
| hippobosca capensis | 1 | species | | fly | |
| euryhelmis monorchis | 1 | species | | helminths | |
| [pasteurella] mairii | 2 | species | bacteria | bacteria | 757 |
| sebaldella termitidis | 2 | species | bacteria | bacteria | 826 |
| porcine rotavirus a | 2 | no rank | viruses | viruses | 10967 |
| human poliovirus 1 strain sabin | 2 | no rank | viruses | viruses | 12082 |
| ichthyosporidium giganteum | 2 | species | plants | fungi | 27976 |
| african horse sickness virus 1 | 2 | no rank | viruses | viruses | 33714 |
| rhipicephalus annulatus | 2 | species | invertebrates | tick | 34611 |
| bluetongue virus 1 | 2 | no rank | viruses | viruses | 35327 |
| henneguya zschokkei | 2 | species | invertebrates | | 35592 |
| [eubacterium] combesii | 2 | species | bacteria | bacteria | 39481 |
| [eubacterium] contortum | 2 | species | bacteria | bacteria | 39482 |
| tyuleniy virus | 2 | species | viruses | viruses | 40004 |
| legionella tucsonensis | 2 | species | bacteria | bacteria | 40335 |
| ovine papillomavirus | 2 | species | viruses | viruses | 40541 |
| greek goat encephalitis virus | 2 | species | viruses | viruses | 41406 |
| coxsackievirus a1 | 2 | no rank | viruses | viruses | 42779 |
| johnsonella | 2 | genus | bacteria | | 43994 |
| mycobacterium conspicuum | 2 | species | bacteria | bacteria | 44010 |
| sepik virus | 2 | species | viruses | viruses | 44026 |
| setosphaeria rostrata | 2 | species | plants | fungi | 45150 |
| strongylus asini | 2 | species | invertebrates | helminths | 52887 |
| batken virus | 2 | no rank | viruses | viruses | 53017 |
| drechslera biseptata | 2 | species | plants | fungi | 56819 |
| porcine enterovirus 9 | 2 | no rank | viruses | viruses | 64141 |
| apoi virus | 2 | species | viruses | viruses | 64280 |
| rio bravo virus | 2 | species | viruses | viruses | 64285 |
| bagaza virus | 2 | species | viruses | viruses | 64290 |
| bussuquara virus | 2 | no rank | viruses | viruses | 64304 |
| kedougou virus | 2 | species | viruses | viruses | 64311 |
| prevotella enoeca | 2 | species | bacteria | bacteria | 76123 |
| cephaliophora irregularis | 2 | species | plants | fungi | 77528 |
| oidiodendron cerealis | 2 | species | plants | fungi | 78142 |
| coenonia | 2 | genus | bacteria | | 78328 |
| cladophialophora boppii | 2 | species | plants | fungi | 82106 |
| cladophialophora arxii | 2 | species | plants | fungi | 82108 |
| tatumella ptyseos | 2 | species | bacteria | bacteria | 82987 |
| eubacterium multiforme | 2 | species | bacteria | bacteria | 83339 |
| nematodirus oiratianus | 2 | species | invertebrates | helminths | 94037 |
| curvularia verruculosa | 2 | species | plants | fungi | 95740 |
| homalogaster paloniae | 2 | species | invertebrates | helminths | 123221 |
| orthocoelium streptocoelium | 2 | species | invertebrates | helminths | 123225 |
| human mastadenovirus e | 2 | species | viruses | viruses | 130308 |
| eimeria porci | 2 | species | invertebrates | protozoa | 130497 |
| chrysomya varipes | 2 | species | invertebrates | fly | 142905 |
| streptococcus entericus | 2 | species | bacteria | bacteria | 155680 |
| cedecea neteri | 2 | species | bacteria | bacteria | 158822 |
| cedecea lapagei | 2 | species | bacteria | bacteria | 158823 |
| neotestudina rosatii | 2 | species | plants | fungi | 160030 |
| corynebacterium mastitidis | 2 | species | bacteria | bacteria | 161890 |
| gasterophilus haemorrhoidalis | 2 | species | invertebrates | fly | 170933 |
| ictalurivirus | 2 | genus | viruses | | 172653 |
| strongyloides fuelleborni kellyi | 2 | subspecies | invertebrates | helminths | 174721 |
| phaeotrichoconis crotalariae | 2 | species | plants | fungi | 179659 |
| iltovirus | 2 | genus | viruses | | 180255 |
| abiotrophia para-adiacens | 2 | species | bacteria | bacteria | 191553 |
| okavirus | 2 | genus | viruses | | 199703 |
| tropilaelaps koenigerum | 2 | species | invertebrates | | 208208 |
| leptospira interrogans serovar australis | 2 | no rank | bacteria | bacteria | 211882 |
| bovine viral diarrhea virus 1-osloss | 2 | no rank | viruses | viruses | 229907 |
| theileria separata | 2 | species | invertebrates | protozoa | 238210 |
| limnatis nilotica | 2 | species | invertebrates | | 251246 |
| ochroconis tshawytschae | 2 | species | plants | fungi | 262132 |
| equinia mamillana | 2 | species | invertebrates | helminths | 268478 |
| segniliparus | 2 | genus | bacteria | | 286801 |
| strongyloides procyonis | 2 | species | invertebrates | helminths | 315248 |
| human t-lymphotropic virus 4 | 2 | species | viruses | viruses | 318279 |
| cyclodontostomum purvisi | 2 | species | invertebrates | helminths | 321341 |
| deltapapillomavirus | 2 | genus | viruses | | 325454 |
| gammapapillomavirus | 2 | genus | viruses | | 325455 |
| lambdapapillomavirus | 2 | genus | viruses | | 325462 |
| microsporum praecox | 2 | species | plants | fungi | 328624 |
| alphapapillomavirus | 2 | genus | viruses | | 333750 |
| xipapillomavirus | 2 | genus | viruses | | 333921 |
| pipapillomavirus | 2 | genus | viruses | | 334211 |
| turkeypox virus | 2 | species | viruses | viruses | 336486 |
| leptospira interrogans serovar sejroe | 2 | no rank | bacteria | bacteria | 340110 |
| leptospira interrogans serovar ballum | 2 | no rank | bacteria | bacteria | 342794 |
| leptospira interrogans serovar tarassovi | 2 | no rank | bacteria | bacteria | 342795 |
| paragonimus bangkokensis | 2 | species | invertebrates | helminths | 362703 |
| bartonella tamiae | 2 | species | bacteria | bacteria | 373638 |
| shigella flexneri 1a | 2 | no rank | bacteria | bacteria | 374923 |
| bovine viral diarrhea virus 3 | 2 | species | viruses | viruses | 381707 |
| falciformispora tompkinsii | 2 | species | plants | fungi | 1489896 |
| cryptosporidium parvum iowa | 2 | no rank | invertebrates | protozoa | 414452 |
| juquitiba virus | 2 | species | viruses | viruses | 430511 |
| leptospira interrogans serovar muenchen | 2 | no rank | bacteria | bacteria | 436145 |
| eimeria piriformis | 2 | species | invertebrates | protozoa | 471280 |
| mycobacterium lepromatosis | 2 | species | bacteria | bacteria | 480418 |
| eimeria irresidua | 2 | species | invertebrates | protozoa | 484792 |
| diphyllobothrium klebanovskii | 2 | species | invertebrates | helminths | 492325 |
| chapare mammarenavirus | 2 | species | viruses | viruses | 499556 |