| chrysomya megacephala | 16 | species | invertebrates | fly | 115424 |
| halicephalobus gingivalis | 7 | species | invertebrates | helminths | 114868 |
| pythium insidiosum | 26 | species | plants | | 114742 |
| streptococcus orisratti | 3 | species | bacteria | bacteria | 114652 |
| typhus group | 30 | species group | bacteria | | 114292 |
| spotted fever group | 52 | species group | bacteria | | 114277 |
| nigrospora sphaerica | 9 | species | plants | fungi | 114231 |
| pseudoramibacter alactolyticus | 13 | species | bacteria | bacteria | 113287 |
| pseudoramibacter | 11 | genus | bacteria | | 113286 |
| arthrinium phaeospermum | 5 | species | plants | fungi | 112178 |
| actinomadura pelletieri | 8 | species | bacteria | bacteria | 111805 |
| plasmodium juxtanucleare | 6 | species | invertebrates | protozoa | 111598 |
| leifsonia | 14 | genus | bacteria | | 110932 |
| entamoeba chattoni | 4 | species | invertebrates | protozoa | 110765 |
| hepatozoon canis | 24 | species | invertebrates | protozoa | 110120 |
| porcine cytomegalovirus | 17 | species | viruses | viruses | 109993 |
| batrachochytrium dendrobatidis | 46 | species | plants | fungi | 109871 |
| ostertagia trifurcata | 5 | species | invertebrates | helminths | 109209 |
| salmonella enterica subsp. enterica serovar newport | 26 | no rank | bacteria | bacteria | 108619 |
| diphyllobothrium stemmacephalum | 5 | species | invertebrates | helminths | 108521 |
| libyostrongylus douglassi | 6 | species | invertebrates | helminths | 108473 |
| graphidium strigosum | 7 | species | invertebrates | helminths | 108472 |
| hyostrongylus rubidus | 11 | species | invertebrates | helminths | 108470 |
| human mastadenovirus b | 3 | species | viruses | viruses | 108098 |
| setaria labiatopapillosa | 4 | species | invertebrates | helminths | 108094 |
| marshallagia marshalli | 11 | species | invertebrates | helminths | 106947 |
| ostertagia gruehneri | 10 | species | invertebrates | helminths | 106944 |
| contracaecum osculatum | 19 | species | invertebrates | helminths | 106324 |
| stellantchasmus falcatus | 8 | species | invertebrates | helminths | 104478 |
| pygidiopsis summa | 4 | species | invertebrates | helminths | 104472 |
| heterophyes nocens | 3 | species | invertebrates | helminths | 104455 |
| picobirnavirus | 17 | genus | viruses | | 104394 |
| anatid herpesvirus 1 | 14 | species | viruses | viruses | 104388 |
| tenacibaculum | 11 | genus | bacteria | | 104267 |
| thelazia callipaeda | 11 | species | invertebrates | helminths | 103827 |
| proteus penneri | 16 | species | bacteria | bacteria | 102862 |
| sarcocystis suihominis | 8 | species | invertebrates | protozoa | 102713 |
| hymenolepis nana | 28 | species | invertebrates | helminths | 102285 |
| cyanobacterium | 151 | genus | bacteria | | 102234 |
| atadenovirus | 14 | genus | viruses | | 100953 |
| madurella mycetomatis | 14 | species | plants | fungi | 100816 |
| trichobilharzia ocellata | 30 | species | invertebrates | helminths | 100602 |
| ornithobilharzia | 8 | genus | invertebrates | | 100597 |
| gigantobilharzia | 7 | genus | invertebrates | | 100593 |
| dendritobilharzia pulverulenta | 4 | species | invertebrates | helminths | 100592 |
| bilharziella polonica | 6 | species | invertebrates | helminths | 100590 |
| austrobilharzia variglandis | 7 | species | invertebrates | helminths | 100588 |
| proteocephalus ambloplitis | 9 | species | invertebrates | helminths | 100446 |
| paragonimus siamensis | 1 | species | invertebrates | helminths | 100271 |
| paragonimus mexicanus | 5 | species | invertebrates | helminths | 100270 |
| paragonimus kellicotti | 10 | species | invertebrates | helminths | 100269 |
| paragonimus heterotremus | 9 | species | invertebrates | helminths | 100268 |
| epizootic haematopoietic necrosis virus | 19 | species | viruses | viruses | 100217 |
| leishmania donovani donovani | 5 | subspecies | invertebrates | protozoa | 99875 |
| spirometra erinaceieuropaei | 12 | species | invertebrates | helminths | 99802 |
| prosthogonimus ovatus | 1 | species | invertebrates | helminths | 99714 |
| besnoitia jellisoni | 14 | species | invertebrates | protozoa | 99174 |
| tanapox virus | 9 | species | viruses | viruses | 99000 |
| salmonella enterica subsp. enterica serovar dublin | 55 | no rank | bacteria | bacteria | 98360 |
| cooperia punctata | 16 | species | invertebrates | helminths | 96640 |
| yellow head virus | 34 | no rank | viruses | viruses | 96029 |
| curvularia clavata | 3 | species | plants | fungi | 95742 |
| curvularia verruculosa | 2 | species | plants | fungi | 95740 |
| sapporo virus | 16 | species | viruses | viruses | 95342 |
| sapovirus | 35 | genus | viruses | | 95341 |
| norwalk-like virus | 49 | no rank | viruses | viruses | 95340 |
| lagovirus | 10 | genus | viruses | | 95339 |
| vesivirus | 13 | genus | viruses | | 95337 |
| ligula intestinalis | 22 | species | invertebrates | helminths | 94845 |
| besnoitia besnoiti | 12 | species | invertebrates | protozoa | 94643 |
| nematodirus oiratianus | 2 | species | invertebrates | helminths | 94037 |
| taenia serialis | 7 | species | invertebrates | helminths | 94035 |
| taenia multiceps | 14 | species | invertebrates | helminths | 94034 |
| cryptosporidium meleagridis | 19 | species | invertebrates | protozoa | 93969 |
| stenella araguata | 4 | species | plants | fungi | 93486 |
| edwardsiella hoshinae | 5 | species | bacteria | bacteria | 93378 |
| pandoraea | 15 | genus | bacteria | | 93217 |
| trichuris ovis | 10 | species | invertebrates | helminths | 93034 |
| cladosporium sphaerospermum | 18 | species | plants | fungi | 92950 |
| ornithodoros coriaceus | 9 | species | invertebrates | tick | 92741 |
| oesophagostomum stephanostomum | 5 | species | invertebrates | helminths | 92252 |
| hortaea werneckii | 16 | species | plants | fungi | 91943 |
| pleurostoma repens | 4 | species | plants | fungi | 91939 |
| phialophora bubakii | 1 | species | plants | fungi | 91933 |
| coniochaeta hoffmannii | 4 | species | plants | fungi | 91930 |
| exophiala spinifera | 17 | species | plants | fungi | 91928 |
| exophiala psychrophila | 1 | species | plants | fungi | 91927 |
| exophiala moniliae | 5 | species | plants | fungi | 91926 |
| asaia | 12 | genus | bacteria | | 91914 |
| exserohilum mcginnisii | 1 | species | plants | fungi | 91494 |
| curvularia australiensis | 6 | species | plants | fungi | 91365 |
| australian bat lyssavirus | 15 | species | viruses | viruses | 90961 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| rhinosporidium seeberi | 14 | species | invertebrates | | 90339 |
| apophysomyces elegans | 24 | species | plants | fungi | 90269 |
| chlamydoabsidia padenii | -3 | species | plants | fungi | 90267 |
| mucor ramosissimus | 5 | species | plants | fungi | 90264 |
| saksenaea vasiformis | 20 | species | plants | fungi | 90258 |
| cokeromyces recurvatus | 7 | species | plants | fungi | 90255 |