| lachnoanaerobaculum saburreum | 14 | species | bacteria | bacteria | 467210 |
| parafasciolopsis fasciolaemorpha | 1 | species | invertebrates | helminths | 465910 |
| fasciola jacksoni | 1 | species | invertebrates | helminths | 465907 |
| neofusicoccum mangiferae | 16 | species | plants | fungi | 463686 |
| diplogonoporus balaenopterae | 3 | species | invertebrates | helminths | 463145 |
| chaetomium atrobrunneum | 5 | species | plants | fungi | 460864 |
| ixodes texanus | 7 | species | invertebrates | tick | 460228 |
| stilesia globipunctata | 4 | species | invertebrates | helminths | 459763 |
| onchocerca dewittei japonica | 3 | subspecies | invertebrates | helminths | 459457 |
| onchocerca dewittei | 3 | species | invertebrates | helminths | 459456 |
| angiostrongylus malaysiensis | 4 | species | invertebrates | helminths | 458178 |
| melophagus ovinus | 13 | species | invertebrates | fly | 452749 |
| hippobosca rufipes | 1 | species | invertebrates | fly | 452747 |
| hippobosca equina | 3 | species | invertebrates | fly | 452746 |
| clostridium perfringens b | 3 | no rank | bacteria | bacteria | 451751 |
| west nile virus h442 | -3 | no rank | viruses | viruses | 449280 |
| leptospira licerasiae serovar varillal | 1 | no rank | bacteria | bacteria | 447107 |
| echinococcus ortleppi | 6 | species | invertebrates | helminths | 446560 |
| acanthopleuribacter | 1 | genus | bacteria | | 442869 |
| leptospira interrogans serovar muenchen | 2 | no rank | bacteria | bacteria | 436145 |
| paragonimus africanus | 5 | species | invertebrates | helminths | 434055 |
| diplogonoporus grandis | 3 | species | invertebrates | helminths | 433352 |
| juquitiba virus | 2 | species | viruses | viruses | 430511 |
| cooperia pectinata | 10 | species | invertebrates | helminths | 420891 |
| chorioptes bovis | 10 | species | invertebrates | | 420257 |
| murine rotavirus a | -3 | no rank | viruses | viruses | 418976 |
| cryptosporidium parvum iowa | 2 | no rank | invertebrates | protozoa | 414452 |
| cronobacter | 10 | genus | bacteria | | 413496 |
| chorioptes texanus | 5 | species | invertebrates | | 411904 |
| candidatus rickettsia rioja | 1 | species | bacteria | bacteria | 409324 |
| gastrodiscoides hominis | 5 | species | invertebrates | helminths | 408852 |
| spironucleus meleagridis | 5 | species | invertebrates | protozoa | 406986 |
| escherichia coli o26 | 25 | no rank | bacteria | bacteria | 404399 |
| leptosphaeria senegalensis | 4 | species | plants | fungi | 399398 |
| horsepox virus | 1 | no rank | viruses | viruses | 397342 |
| cryptosporidium suis | 8 | species | invertebrates | protozoa | 396558 |
| bartonella rochalimae | 5 | species | bacteria | bacteria | 395923 |
| fascioloides magna | 20 | species | invertebrates | helminths | 394415 |
| schistosoma guineensis | 5 | species | invertebrates | helminths | 393876 |
| acrophialophora fusispora | 7 | species | plants | fungi | 391091 |
| simulium arcticum | 5 | species | invertebrates | fly | 390676 |
| sars coronavirus gdh-bjh01 | -3 | no rank | viruses | viruses | 388737 |
| onchocerca flexuosa | 4 | species | invertebrates | helminths | 387005 |
| bacteroides galacturonicus | 1 | species | bacteria | bacteria | 384639 |
| [bacteroides] pectinophilus | 1 | species | bacteria | bacteria | 384638 |
| brachyspira suanatina | 1 | species | bacteria | bacteria | 381802 |
| bovine viral diarrhea virus 3 | 2 | species | viruses | viruses | 381707 |
| european sheatfish virus | 4 | no rank | viruses | viruses | 380179 |
| anajatuba virus | 1 | no rank | viruses | viruses | 379964 |
| myxobolus dujardini | -3 | species | invertebrates | | 378072 |
| escherichia coli o103:h2 | 6 | no rank | bacteria | bacteria | 376725 |
| spaniopsis | 1 | genus | invertebrates | | 375791 |
| shigella flexneri 1a | 2 | no rank | bacteria | bacteria | 374923 |
| eurytrema coelmaticum | 1 | species | invertebrates | helminths | 374592 |
| eurytrema pancreaticum | 5 | species | invertebrates | helminths | 374591 |
| bartonella tamiae | 2 | species | bacteria | bacteria | 373638 |
| escherichia coli o111:nm | 3 | no rank | bacteria | bacteria | 373045 |
| adenocephalus pacificus | 5 | species | invertebrates | helminths | 372152 |
| diphyllobothrium lanceolatum | -3 | species | invertebrates | helminths | 372084 |
| diphyllobothrium cordatum | 1 | species | invertebrates | helminths | 372083 |
| neodeightonia subglobosa | 1 | species | plants | fungi | 371117 |
| ancylostoma braziliense | 12 | species | invertebrates | helminths | 369059 |
| veronaea botryosa | 4 | species | plants | fungi | 364773 |
| granulibacter | 9 | genus | bacteria | | 364409 |
| turkey astrovirus 1 | 5 | no rank | viruses | viruses | 364370 |
| paragonimus bangkokensis | 2 | species | invertebrates | helminths | 362703 |
| leptopsylla segnis | 8 | species | invertebrates | flea | 360617 |
| border disease virus | 38 | species | viruses | viruses | 358764 |
| burkholderia pseudomallei 1106b | -3 | no rank | bacteria | bacteria | 357347 |
| chick syncytial virus | 3 | species | viruses | viruses | 353768 |
| madrid virus | 1 | species | viruses | viruses | 348013 |
| restan virus | 1 | no rank | viruses | viruses | 348011 |
| quambalaria cyanescens | 7 | species | plants | fungi | 345902 |
| leptospira interrogans serovar tarassovi | 2 | no rank | bacteria | bacteria | 342795 |
| leptospira interrogans serovar ballum | 2 | no rank | bacteria | bacteria | 342794 |
| leptospira interrogans serovar sejroe | 2 | no rank | bacteria | bacteria | 340110 |
| leptospira borgpetersenii serovar hardjo-bovis | 4 | no rank | bacteria | bacteria | 338217 |
| leptospira interrogans serovar bratislava | 8 | no rank | bacteria | bacteria | 338215 |
| sarcoptes scabiei type suis | 11 | no rank | invertebrates | | 337908 |
| deltapapillomavirus 4 | 45 | species | viruses | viruses | 337052 |
| avian nephritis virus 1 | -3 | no rank | viruses | viruses | 336960 |
| turkeypox virus | 2 | species | viruses | viruses | 336486 |
| rotavirus d | -3 | species | viruses | viruses | 335100 |
| crepidostomum | 13 | genus | invertebrates | | 334452 |
| angiostrongylus costaricensis | 14 | species | invertebrates | helminths | 334426 |
| thetapapillomavirus | -3 | genus | viruses | | 334213 |
| pipapillomavirus | 2 | genus | viruses | | 334211 |
| mupapillomavirus | -3 | genus | viruses | | 334202 |
| betapapillomavirus | 10 | genus | viruses | | 333922 |
| xipapillomavirus | 2 | genus | viruses | | 333921 |
| zetapapillomavirus | -3 | genus | viruses | | 333918 |
| alphapapillomavirus | 2 | genus | viruses | | 333750 |
| candidatus rickettsia kellyi | 1 | species | bacteria | bacteria | 332615 |
| dracunculus insignis | 7 | species | invertebrates | helminths | 331418 |
| parastreptomyces | 1 | genus | bacteria | | 329648 |
| microsporum praecox | 2 | species | plants | fungi | 328624 |
| microsporum vanbreuseghemii | 1 | species | plants | fungi | 328623 |
| lambdapapillomavirus | 2 | genus | viruses | | 325462 |
| omikronpapillomavirus | 1 | genus | viruses | | 325461 |
| epsilonpapillomavirus | 1 | genus | viruses | | 325459 |