| tubercularia vulgaris | 4 | species | plants | fungi | 29877 |
| janthinobacterium | 22 | genus | bacteria | | 29580 |
| taylorella equigenitalis | 15 | species | bacteria | bacteria | 29575 |
| taylorella | 15 | genus | bacteria | | 29574 |
| mycoplasma ovipneumoniae | 13 | species | bacteria | bacteria | 29562 |
| mycoplasma meleagridis | 18 | species | bacteria | bacteria | 29561 |
| mycoplasma hyosynoviae | 12 | species | bacteria | bacteria | 29559 |
| mycoplasma canadense | 7 | species | bacteria | bacteria | 29554 |
| lawsonia intracellularis | 32 | species | bacteria | bacteria | 29546 |
| porphyromonas circumdentaria | 7 | species | bacteria | bacteria | 29524 |
| brachyspira | 42 | genus | bacteria | | 29521 |
| borrelia crocidurae | 13 | species | bacteria | bacteria | 29520 |
| borreliella garinii | 49 | species | bacteria | bacteria | 29519 |
| borreliella afzelii | 46 | species | bacteria | bacteria | 29518 |
| leptospira meyeri | 11 | species | bacteria | bacteria | 29508 |
| leptospira kirschneri | 13 | species | bacteria | bacteria | 29507 |
| leptospira inadai | 6 | species | bacteria | bacteria | 29506 |
| mycoplasma haemofelis | 29 | species | bacteria | bacteria | 29501 |
| vibrio furnissii | 25 | species | bacteria | bacteria | 29494 |
| photorhabdus | 44 | genus | bacteria | | 29487 |
| yersinia ruckeri | 36 | species | bacteria | bacteria | 29486 |
| yersinia rohdei | 3 | species | bacteria | bacteria | 29485 |
| yersinia frederiksenii | 11 | species | bacteria | bacteria | 29484 |
| veillonella parvula | 36 | species | bacteria | bacteria | 29466 |
| veillonella | 49 | genus | bacteria | | 29465 |
| brucella suis | 38 | species | bacteria | bacteria | 29461 |
| brucella melitensis | 52 | species | bacteria | bacteria | 29459 |
| moraxella ovis | 11 | species | bacteria | bacteria | 29433 |
| psychrobacter phenylpyruvicus | 11 | species | bacteria | bacteria | 29432 |
| acinetobacter haemolyticus | 15 | species | bacteria | bacteria | 29430 |
| legionella oakridgensis | 4 | species | bacteria | bacteria | 29423 |
| dolosigranulum | 6 | genus | bacteria | | 29393 |
| gemella morbillorum | 18 | species | bacteria | bacteria | 29391 |
| staphylococcus saprophyticus | 42 | species | bacteria | bacteria | 29385 |
| mycobacterium shimoidei | 3 | species | bacteria | bacteria | 29313 |
| mycobacterium haemophilum | 26 | species | bacteria | bacteria | 29311 |
| neospora caninum | 72 | species | invertebrates | protozoa | 29176 |
| dictyocaulus viviparus | 29 | species | invertebrates | helminths | 29172 |
| ancylostoma caninum | 48 | species | invertebrates | helminths | 29170 |
| caedibacter | 12 | genus | bacteria | | 28905 |
| mycoplasma bovis | 34 | species | bacteria | bacteria | 28903 |
| salmonella enterica | 107 | species | bacteria | bacteria | 28901 |
| rotavirus b | 22 | species | viruses | viruses | 28876 |
| rotavirus a | 58 | species | viruses | viruses | 28875 |
| camelpox virus | 21 | species | viruses | viruses | 28873 |
| diphyllobothrium dendriticum | 24 | species | invertebrates | helminths | 28845 |
| moniezia expansa | 31 | species | invertebrates | helminths | 28841 |
| nematodirus battus | 19 | species | invertebrates | helminths | 28839 |
| sphingobacterium | 27 | genus | bacteria | | 28453 |
| burkholderia pseudomallei | 61 | species | bacteria | bacteria | 28450 |
| neisseria subflava | 14 | species | bacteria | bacteria | 28449 |
| porcine reproductive and respiratory syndrome virus | 65 | species | viruses | viruses | 28344 |
| human t-lymphotropic virus 3 | 11 | no rank | viruses | viruses | 28332 |
| arcanobacterium haemolyticum | 22 | species | bacteria | bacteria | 28264 |
| arcanobacterium | 29 | genus | bacteria | | 28263 |
| ornithobacterium rhinotracheale | 20 | species | bacteria | bacteria | 28251 |
| ornithobacterium | 20 | genus | bacteria | | 28250 |
| arcobacter cryaerophilus | 26 | species | bacteria | bacteria | 28198 |
| arcobacter butzleri | 37 | species | bacteria | bacteria | 28197 |
| arcobacter | 47 | genus | bacteria | | 28196 |
| capnocytophaga cynodegmi | 4 | species | bacteria | bacteria | 28189 |
| capnocytophaga canimorsus | 18 | species | bacteria | bacteria | 28188 |
| leptospira weilii | 3 | species | bacteria | bacteria | 28184 |
| leptospira santarosai | 7 | species | bacteria | bacteria | 28183 |
| leptospira noguchii | 5 | species | bacteria | bacteria | 28182 |
| bisgaard taxon 2 | -3 | species | bacteria | bacteria | 28157 |
| bisgaard taxon 13 | 1 | species | bacteria | bacteria | 28155 |
| yersinia kristensenii | 11 | species | bacteria | bacteria | 28152 |
| serratia proteamaculans | 17 | species | bacteria | bacteria | 28151 |
| cronobacter sakazakii | 43 | species | bacteria | bacteria | 28141 |
| prevotella veroralis | 7 | species | bacteria | bacteria | 28137 |
| prevotella oulorum | 4 | species | bacteria | bacteria | 28136 |
| prevotella oris | 13 | species | bacteria | bacteria | 28135 |
| prevotella oralis | 18 | species | bacteria | bacteria | 28134 |
| prevotella nigrescens | 37 | species | bacteria | bacteria | 28133 |
| prevotella melaninogenica | 28 | species | bacteria | bacteria | 28132 |
| prevotella intermedia | 65 | species | bacteria | bacteria | 28131 |
| prevotella disiens | 8 | species | bacteria | bacteria | 28130 |
| prevotella denticola | 18 | species | bacteria | bacteria | 28129 |
| prevotella corporis | 6 | species | bacteria | bacteria | 28128 |
| prevotella buccalis | 4 | species | bacteria | bacteria | 28127 |
| prevotella buccae | 17 | species | bacteria | bacteria | 28126 |
| prevotella bivia | 20 | species | bacteria | bacteria | 28125 |
| porphyromonas endodontalis | 27 | species | bacteria | bacteria | 28124 |
| porphyromonas asaccharolytica | 22 | species | bacteria | bacteria | 28123 |
| fibrobacter intestinalis | 9 | species | bacteria | bacteria | 28122 |
| bacteroides zoogleoformans | 5 | species | bacteria | bacteria | 28119 |
| odoribacter splanchnicus | 4 | species | bacteria | bacteria | 28118 |
| bacteroides ovatus | 24 | species | bacteria | bacteria | 28116 |
| porphyromonas macacae | 16 | species | bacteria | bacteria | 28115 |
| porphyromonas levii | 12 | species | bacteria | bacteria | 28114 |
| bacteroides heparinolyticus | 14 | species | bacteria | bacteria | 28113 |
| tannerella forsythia | 56 | species | bacteria | bacteria | 28112 |
| bacteroides eggerthii | 4 | species | bacteria | bacteria | 28111 |
| neisseria weaveri | 6 | species | bacteria | bacteria | 28091 |
| acinetobacter lwoffii | 27 | species | bacteria | bacteria | 28090 |
| legionella wadsworthii | 1 | species | bacteria | bacteria | 28088 |
| legionella sainthelensi | 4 | species | bacteria | bacteria | 28087 |
| legionella cincinnatiensis | 4 | species | bacteria | bacteria | 28085 |
| legionella cherrii | 1 | species | bacteria | bacteria | 28084 |