| eimeria intestinalis | 7 | species | invertebrates | protozoa | 471278 |
| eimeria piriformis | 2 | species | invertebrates | protozoa | 471280 |
| eimeria magna | 15 | species | invertebrates | protozoa | 471282 |
| eimeria perforans | 11 | species | invertebrates | protozoa | 471283 |
| cystocaulus ocreatus | 7 | species | invertebrates | helminths | 473975 |
| protostrongylus stilesi | 8 | species | invertebrates | helminths | 473978 |
| analges passerinus | -3 | species | invertebrates | | 474139 |
| pterolichus obtusus | 1 | species | invertebrates | | 474276 |
| colletotrichum gloeosporioides | 48 | species | plants | fungi | 474922 |
| nupapillomavirus | -3 | genus | viruses | | 475861 |
| echidnophaga gallinacea | 8 | species | invertebrates | flea | 475929 |
| spilopsyllus cuniculi | 18 | species | invertebrates | flea | 476434 |
| bibersteinia | 3 | genus | bacteria | | 476528 |
| acarapis woodi | 25 | species | invertebrates | | 478375 |
| leptospira wolffii serovar khorat | -3 | no rank | bacteria | bacteria | 479645 |
| mycobacterium lepromatosis | 2 | species | bacteria | bacteria | 480418 |
| ornithonyssus bacoti | 9 | species | invertebrates | | 480692 |
| demodex folliculorum | 27 | species | invertebrates | | 481310 |
| cystoisospora belli | 32 | species | invertebrates | protozoa | 482538 |
| trichuris discolor | 7 | species | invertebrates | helminths | 483153 |
| eimeria irresidua | 2 | species | invertebrates | protozoa | 484792 |
| hbv genotype a | 26 | no rank | viruses | viruses | 489455 |
| microsporum gypseum | 32 | no rank | plants | fungi | 489714 |
| curvularia pallescens | 7 | no rank | plants | fungi | 491261 |
| diphyllobothrium klebanovskii | 2 | species | invertebrates | helminths | 492325 |
| spirobacillus | 4 | genus | bacteria | | 495819 |
| clostridioides difficile cip 107932 | -3 | no rank | bacteria | bacteria | 499176 |
| chapare mammarenavirus | 2 | species | viruses | viruses | 499556 |
| lasiodiplodia theobromae | 20 | no rank | plants | fungi | 502207 |
| dasypsyllus gallinulae | 1 | species | invertebrates | flea | 507039 |
| aliivibrio | 6 | genus | bacteria | | 511678 |
| eustrongylides | 15 | genus | invertebrates | | 513041 |
| dioctophyme renale | 5 | species | invertebrates | helminths | 513045 |
| echinococcus canadensis | 2 | species | invertebrates | helminths | 519352 |
| borrelia burgdorferi n40 | 10 | no rank | bacteria | bacteria | 521007 |
| trichophyton mentagrophytes | 41 | species | plants | fungi | 523103 |
| pseudamphistomum truncatum | 5 | species | invertebrates | helminths | 524295 |
| equine papillomavirus 2 | 1 | species | viruses | viruses | 526413 |
| dermacentor silvarum | 5 | species | invertebrates | tick | 543639 |
| ascaridia compar | 3 | species | invertebrates | helminths | 544313 |
| yersinia pestis biovar medievalis str. harbin 35 | -3 | no rank | bacteria | bacteria | 547048 |
| infectious bursal disease virus beh2003 | -3 | no rank | viruses | viruses | 551140 |
| cryptococcus gattii vgiii | 37 | species | plants | fungi | 552467 |
| strongyloides ransomi | 12 | species | invertebrates | helminths | 553534 |
| pyrenochaeta unguis-hominis | 2 | species | plants | fungi | 555973 |
| cryptosporidium cuniculus | 2 | species | invertebrates | protozoa | 564424 |
| pleurophoma pleurospora | -3 | species | plants | fungi | 565432 |
| bundibugyo ebolavirus | 2 | species | viruses | viruses | 565995 |
| astrovirus mlb1 | 3 | species | viruses | viruses | 568715 |
| hyalomma detritum | 8 | species | invertebrates | tick | 572043 |
| myceliophthora thermophila | 26 | species | plants | fungi | 573728 |
| streptococcus pneumoniae ap200 | -3 | no rank | bacteria | bacteria | 574093 |
| demodex brevis | 11 | species | invertebrates | | 574145 |
| bunostomum phlebotomum | 10 | species | invertebrates | helminths | 577651 |
| bertiella studeri | 4 | species | invertebrates | helminths | 578852 |
| feline poxvirus ita2_bc | -3 | species | viruses | viruses | 580061 |
| cladorrhinum bulbillosum | 1 | species | plants | fungi | 585595 |
| murine coronavirus inf-mhv-a59 | -3 | no rank | viruses | viruses | 591071 |
| fusarium aquaeductuum | 10 | species | plants | fungi | 595638 |
| trichobilharzia physellae | 3 | species | invertebrates | helminths | 596246 |
| trichobilharzia stagnicolae | 3 | species | invertebrates | helminths | 596254 |
| heterakis isolonche | 3 | species | invertebrates | helminths | 596447 |
| tacaiuma virus | 2 | species | viruses | viruses | 611707 |
| caprine arthritis encephalitis virus ov496 | -3 | no rank | viruses | viruses | 621214 |
| candiru virus | -3 | species | viruses | viruses | 629725 |
| alenquer virus | -3 | no rank | viruses | viruses | 629726 |
| chagres virus | 2 | species | viruses | viruses | 629727 |
| gongylonema pulchrum | 6 | species | invertebrates | helminths | 637853 |
| legionella longbeachae d-4968 | -3 | no rank | bacteria | bacteria | 638315 |
| chilodonella cyprini | 4 | species | invertebrates | protozoa | 639309 |
| wohlfahrtia magnifica | 11 | species | invertebrates | fly | 641482 |
| linguatula serrata | 11 | species | invertebrates | | 646052 |
| lujo mammarenavirus | 1 | species | viruses | viruses | 649188 |
| ochrocladosporium elatum | 1 | species | plants | fungi | 652621 |
| feline sarcoid-associated papillomavirus | 1 | species | viruses | viruses | 655222 |
| dirofilaria ursi | 5 | species | invertebrates | helminths | 658420 |
| canine papillomavirus 5 | -3 | no rank | viruses | viruses | 658422 |
| giardia lamblia p15 | -3 | no rank | invertebrates | protozoa | 658858 |
| cryptosporidium xiaoi | 3 | species | invertebrates | protozoa | 659607 |
| tritirachium oryzae | 1 | species | plants | fungi | 661394 |
| ixodes canisuga | 6 | species | invertebrates | tick | 662032 |
| ornithonyssus bursa | 11 | species | invertebrates | | 663933 |
| haplorchis yokogawai | 3 | species | invertebrates | helminths | 667377 |
| alaria mustelae | 4 | species | invertebrates | helminths | 669500 |
| wohlfahrtia nuba | -3 | species | invertebrates | fly | 670615 |
| selenomonas artemidis | 6 | species | bacteria | bacteria | 671224 |
| vibrio mimicus mb451 | -3 | no rank | bacteria | bacteria | 675806 |
| concinnum ten | 1 | species | invertebrates | helminths | 676610 |
| tetraploa aristata | 4 | species | plants | fungi | 682077 |
| rhodococcus equi 103s | -3 | no rank | bacteria | bacteria | 685727 |
| acremonium curvulum | 2 | species | plants | fungi | 687987 |
| quaranfil virus | 3 | species | viruses | viruses | 688436 |
| salivirus mn-2a | -3 | species | viruses | viruses | 688450 |
| sandfly fever turkey virus | -3 | no rank | viruses | viruses | 688699 |
| vaccinia virus mariana | 1 | no rank | viruses | viruses | 691321 |
| fischoederius cobboldi | 1 | species | invertebrates | helminths | 691744 |
| fischoederius elongatus | 3 | species | invertebrates | helminths | 691745 |
| bovine rhinitis b virus | 1 | species | viruses | viruses | 693066 |
| avian coronavirus | 35 | species | viruses | viruses | 694014 |
| spring viraemia of carp virus | 21 | species | viruses | viruses | 696863 |