| gb virus c | 69 | species | viruses | viruses | 54290 |
| raoultella ornithinolytica | 8 | species | bacteria | bacteria | 54291 |
| bovine viral diarrhea virus 2 | 26 | no rank | viruses | viruses | 54315 |
| paramphistomum | 18 | genus | invertebrates | | 54402 |
| salmonella bongori | 18 | species | bacteria | bacteria | 54736 |
| brevibacillus | 25 | genus | bacteria | | 55080 |
| phyllosticta citricarpa | 10 | species | plants | fungi | 55181 |
| malassezia furfur | 48 | species | plants | fungi | 55194 |
| metastrongylus pudendotectus | 5 | species | invertebrates | helminths | 55275 |
| metastrongylus salmi | 3 | species | invertebrates | helminths | 55276 |
| mycobacterium avium-intracellulare | 20 | species | bacteria | bacteria | 55883 |
| leucobacter | 7 | genus | bacteria | | 55968 |
| infectious salmon anemia virus | 32 | species | viruses | viruses | 55987 |
| triaenophorus | 16 | genus | invertebrates | | 56556 |
| triaenophorus nodulosus | 9 | species | invertebrates | helminths | 56557 |
| mycobacterium mucogenicum | 11 | species | bacteria | bacteria | 56689 |
| tritrichomonas suis | 10 | species | invertebrates | protozoa | 56690 |
| trichomonas gallinae | 19 | species | invertebrates | protozoa | 56777 |
| drechslera biseptata | 2 | species | plants | fungi | 56819 |
| dermacentor reticulatus | 22 | species | invertebrates | tick | 57047 |
| dicrocoelium dendriticum | 19 | species | invertebrates | helminths | 57078 |
| fusarium dimerum | 9 | species | plants | fungi | 57145 |
| posthodiplostomum minimum | 14 | species | invertebrates | helminths | 57260 |
| mycoplasma suis | 19 | species | bacteria | bacteria | 57372 |
| microvirgula | 6 | genus | bacteria | | 57479 |
| european bat lyssavirus 1 | 19 | species | viruses | viruses | 57482 |
| european bat lyssavirus 2 | 14 | species | viruses | viruses | 57483 |
| kocuria | 25 | genus | bacteria | | 57493 |
| kytococcus | 8 | genus | bacteria | | 57499 |
| tsukamurella tyrosinosolvens | 4 | species | bacteria | bacteria | 57704 |
| citrobacter braakii | 10 | species | bacteria | bacteria | 57706 |
| candidatus phlomobacter | 9 | genus | bacteria | | 57962 |
| moritella | 15 | genus | bacteria | | 58050 |
| rhizopus microsporus | 25 | species | plants | fungi | 58291 |
| aranicola | 4 | genus | bacteria | | 58337 |
| encephalitozoon intestinalis | 43 | species | plants | fungi | 58839 |
| rickettsiella | 14 | genus | bacteria | | 59195 |
| porrocaecum depressum | 1 | species | invertebrates | helminths | 59262 |
| toxascaris leonina | 22 | species | invertebrates | helminths | 59264 |
| getah virus | 11 | species | viruses | viruses | 59300 |
| mayaro virus | 11 | species | viruses | viruses | 59301 |
| bebaru virus | 1 | species | viruses | viruses | 59305 |
| lumpy skin disease virus | 16 | species | viruses | viruses | 59509 |
| trueperella bernardiae | 8 | species | bacteria | bacteria | 59561 |
| ilheus virus | 6 | species | viruses | viruses | 59563 |
| paragonimus miyazakii | 6 | species | invertebrates | helminths | 59628 |
| paragonimus ohirai | 13 | species | invertebrates | helminths | 59629 |
| paragonimus skrjabini | 4 | species | invertebrates | helminths | 59630 |
| ixodes sculptus | 4 | species | invertebrates | tick | 59653 |
| chryseobacterium | 31 | genus | bacteria | | 59732 |
| empedobacter | 9 | genus | bacteria | | 59734 |
| bergeyella | 13 | genus | bacteria | | 59735 |
| myxobolus cerebralis | 31 | species | invertebrates | | 59783 |
| rhipicephalus decoloratus | -3 | species | invertebrates | tick | 60189 |
| rhipicephalus evertsi | 16 | species | invertebrates | tick | 60190 |
| dermacentor albipictus | 15 | species | invertebrates | tick | 60249 |
| dermacentor halli | 1 | species | invertebrates | tick | 60250 |
| dermacentor nitens | 13 | species | invertebrates | tick | 60253 |
| dermacentor occidentalis | 17 | species | invertebrates | tick | 60254 |
| diphyllobothrium latum | 18 | species | invertebrates | helminths | 60516 |
| taenia asiatica | 10 | species | invertebrates | helminths | 60517 |
| macracanthorhynchus ingens | 7 | species | invertebrates | helminths | 60534 |
| ceratonova shasta | 26 | species | invertebrates | | 60662 |
| mucambo virus | 7 | species | viruses | viruses | 60875 |
| sanguibacter | 6 | genus | bacteria | | 60919 |
| oesophagostomum bifurcum | 17 | species | invertebrates | helminths | 61179 |
| oesophagostomum dentatum | 24 | species | invertebrates | helminths | 61180 |
| oesophagostomum quadrispinulatum | 10 | species | invertebrates | helminths | 61181 |
| gnathostoma binucleatum | 5 | species | invertebrates | helminths | 61466 |
| enterobacter asburiae | 18 | species | bacteria | bacteria | 61645 |
| lelliottia amnigena | 12 | species | bacteria | bacteria | 61646 |
| pluralibacter gergoviae | 11 | species | bacteria | bacteria | 61647 |
| sarcocystis hominis | 10 | species | invertebrates | protozoa | 61650 |
| serratia ficaria | 10 | species | bacteria | bacteria | 61651 |
| serratia rubidaea | 10 | species | bacteria | bacteria | 61652 |
| nematodirus filicollis | 11 | species | invertebrates | helminths | 61840 |
| nematodirus spathiger | 16 | species | invertebrates | helminths | 61841 |
| cooperia surnabada | 6 | species | invertebrates | helminths | 62054 |
| cooperia curticei | 15 | species | invertebrates | helminths | 62055 |
| toxocara vitulorum | 10 | species | invertebrates | helminths | 62080 |
| eyach virus | 8 | species | viruses | viruses | 62352 |
| varroa jacobsoni | 45 | species | invertebrates | | 62625 |
| paragonimus iloktsuenensis | 3 | species | invertebrates | helminths | 62813 |
| paragonimus sadoensis | 1 | species | invertebrates | helminths | 62814 |
| chabertia ovina | 12 | species | invertebrates | helminths | 63233 |
| hendra virus | 43 | species | viruses | viruses | 63330 |
| arthroderma benhamiae | 12 | species | plants | fungi | 63400 |
| arthroderma fulvum | 4 | species | plants | fungi | 63401 |
| arthroderma otae | 39 | species | plants | fungi | 63405 |
| arthroderma simii | 5 | species | plants | fungi | 63406 |
| arthroderma vanbreuseghemii | 8 | species | plants | fungi | 63407 |
| trichophyton verrucosum | 19 | species | plants | fungi | 63417 |
| trichophyton equinum | 10 | species | plants | fungi | 63418 |
| trichophyton concentricum | 5 | species | plants | fungi | 63419 |
| swine hepatitis e virus | 25 | no rank | viruses | viruses | 63421 |
| porcine enterovirus 9 | 2 | no rank | viruses | viruses | 64141 |
| apoi virus | 2 | species | viruses | viruses | 64280 |
| dakar bat virus | 1 | species | viruses | viruses | 64282 |
| rio bravo virus | 2 | species | viruses | viruses | 64285 |
| usutu virus | 15 | species | viruses | viruses | 64286 |