| rhipicephalus sanguineus | 41 | species | invertebrates | tick | 34632 |
| dermanyssus gallinae | 23 | species | invertebrates | | 34641 |
| protophormia terraenovae | 43 | species | invertebrates | fly | 34676 |
| haematobia irritans exigua | 17 | subspecies | invertebrates | fly | 34678 |
| cryptosporidium wrairi | 10 | species | invertebrates | protozoa | 35083 |
| nosema apis | 22 | species | plants | fungi | 35231 |
| pleistophora | 28 | genus | plants | | 35233 |
| gallid herpesvirus 3 | 1 | species | viruses | viruses | 35250 |
| alcelaphine herpesvirus 1 | 26 | species | viruses | viruses | 35252 |
| bunyamwera virus | 31 | species | viruses | viruses | 35304 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| bwamba virus | 3 | species | viruses | viruses | 35310 |
| nyando virus | 1 | no rank | viruses | viruses | 35316 |
| thogotovirus | 4 | genus | viruses | | 35323 |
| bluetongue virus 1 | 2 | no rank | viruses | viruses | 35327 |
| bovine rotavirus a | 1 | no rank | viruses | viruses | 35333 |
| [eubacterium] brachy | 9 | species | bacteria | bacteria | 35517 |
| [eubacterium] nodatum | 17 | species | bacteria | bacteria | 35518 |
| mogibacterium timidum | 11 | species | bacteria | bacteria | 35519 |
| onchocerca cervicalis | 14 | species | invertebrates | helminths | 35522 |
| pelodera strongyloides | 9 | species | invertebrates | helminths | 35557 |
| rhabditella axei | 3 | species | invertebrates | helminths | 35559 |
| ixodes angustus | 7 | species | invertebrates | tick | 35564 |
| ixodes cookei | 12 | species | invertebrates | tick | 35565 |
| ixodes muris | 10 | species | invertebrates | tick | 35566 |
| stomoxys calcitrans | 35 | species | invertebrates | fly | 35570 |
| henneguya zschokkei | 2 | species | invertebrates | | 35592 |
| vesicular exanthema of swine virus | 11 | species | viruses | viruses | 35612 |
| citrobacter amalonaticus | 12 | species | bacteria | bacteria | 35703 |
| thielavia terrestris | 10 | species | plants | fungi | 35720 |
| sporichthya | 10 | genus | bacteria | | 35750 |
| corynebacterium kutscheri | 11 | species | bacteria | bacteria | 35755 |
| corynebacterium pilosum | 7 | species | bacteria | bacteria | 35756 |
| corynebacterium cystitidis | 4 | species | bacteria | bacteria | 35757 |
| rickettsia africae | 20 | species | bacteria | bacteria | 35788 |
| rickettsia japonica | 14 | species | bacteria | bacteria | 35790 |
| rickettsia massiliae | 16 | species | bacteria | bacteria | 35791 |
| rickettsia sibirica | 14 | species | bacteria | bacteria | 35793 |
| helicobacter heilmannii | 37 | species | bacteria | bacteria | 35817 |
| helicobacter pullorum | 19 | species | bacteria | bacteria | 35818 |
| acetivibrio | 19 | genus | bacteria | | 35829 |
| bilophila | 21 | genus | bacteria | | 35832 |
| bilophila wadsworthia | 21 | species | bacteria | bacteria | 35833 |
| mucor circinelloides | 27 | species | plants | fungi | 36080 |
| trichuris trichiura | 51 | species | invertebrates | helminths | 36087 |
| onchocerca armillata | 5 | species | invertebrates | helminths | 36091 |
| plasmodium ovale | 24 | species | invertebrates | protozoa | 36330 |
| venezuelan equine encephalitis virus (strain everglades fe3-7c) | -3 | no rank | viruses | viruses | 36383 |
| rotavirus c | 33 | species | viruses | viruses | 36427 |
| streptococcus sp. 'group a' | 124 | species | bacteria | bacteria | 36470 |
| penicillium commune | 18 | species | plants | fungi | 36653 |
| isoparorchis hypselobagri | 5 | species | invertebrates | helminths | 36663 |
| dermabacter | 9 | genus | bacteria | | 36739 |
| corynebacterium bovis | 27 | species | bacteria | bacteria | 36808 |
| mycobacterium abscessus | 38 | species | bacteria | bacteria | 36809 |
| mycobacterium genavense | 21 | species | bacteria | bacteria | 36812 |
| gordonia amarae | 22 | species | bacteria | bacteria | 36821 |
| gordonia rubripertincta | 32 | species | bacteria | bacteria | 36822 |
| gordonia sputi | 7 | species | bacteria | bacteria | 36823 |
| [clostridium] colinum | 4 | species | bacteria | bacteria | 36835 |
| clavispora lusitaniae | 40 | species | plants | fungi | 36911 |
| meleagrid herpesvirus 1 | 39 | species | viruses | viruses | 37108 |
| chikungunya virus | 39 | species | viruses | viruses | 37124 |
| mycobacterium avium complex | 95 | species | bacteria | bacteria | 37162 |
| human herpesvirus 8 | 140 | species | viruses | viruses | 37296 |
| bovine calicivirus | 3 | no rank | viruses | viruses | 37300 |
| nocardia brasiliensis | 26 | species | bacteria | bacteria | 37326 |
| nocardia farcinica | 23 | species | bacteria | bacteria | 37329 |
| nocardia nova | 13 | species | bacteria | bacteria | 37330 |
| nocardia transvalensis | 10 | species | bacteria | bacteria | 37333 |
| gyrodactylus salaris | 33 | species | invertebrates | helminths | 37629 |
| corynebacterium pseudodiphtheriticum | 13 | species | bacteria | bacteria | 37637 |
| enterococcus casseliflavus | 32 | species | bacteria | bacteria | 37734 |
| rickettsia honei | 12 | species | bacteria | bacteria | 37816 |
| gyrodactylus | 46 | genus | invertebrates | | 37846 |
| dietzia | 19 | genus | bacteria | | 37914 |
| rhinocladiella aquaspersa | 6 | species | plants | fungi | 37936 |
| parengyodontium album | 29 | species | plants | fungi | 37998 |
| chaetomium globosum | 30 | species | plants | fungi | 38033 |
| avian orthoreovirus | 30 | species | viruses | viruses | 38170 |
| corynebacterium afermentans | 10 | species | bacteria | bacteria | 38286 |
| corynebacterium jeikeium | 22 | species | bacteria | bacteria | 38289 |
| corynebacterium macginleyi | 7 | species | bacteria | bacteria | 38290 |
| photobacterium damselae | 24 | species | bacteria | bacteria | 38293 |
| corynebacterium minutissimum | 16 | species | bacteria | bacteria | 38301 |
| rhodococcus rhodnii | 9 | species | bacteria | bacteria | 38312 |
| bartonella henselae | 77 | species | bacteria | bacteria | 38323 |
| avian metapneumovirus | 28 | species | viruses | viruses | 38525 |
| schistosomatium | 18 | genus | invertebrates | | 38740 |
| schistosomatium douthitti | 18 | species | invertebrates | helminths | 38741 |
| schistosoma mekongi | 12 | species | invertebrates | helminths | 38744 |
| duvenhage virus | 10 | species | viruses | viruses | 38767 |
| yaba monkey tumor virus | 9 | species | viruses | viruses | 38804 |
| banzi virus | 9 | species | viruses | viruses | 38837 |
| human parechovirus 2 | 16 | no rank | viruses | viruses | 39085 |
| heterobilharzia americana | 11 | species | invertebrates | helminths | 39320 |
| curvularia brachyspora | 4 | species | plants | fungi | 39400 |
| phialophora verrucosa | 16 | species | plants | fungi | 39412 |
| [eubacterium] combesii | 2 | species | bacteria | bacteria | 39481 |
| [eubacterium] contortum | 2 | species | bacteria | bacteria | 39482 |