| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| poliovirus 1 | 47 | no rank | viruses | viruses | 12080 |
| human poliovirus 1 strain sabin | 2 | no rank | viruses | viruses | 12082 |
| poliovirus 2 | 26 | no rank | viruses | viruses | 12083 |
| poliovirus 3 | 29 | no rank | viruses | viruses | 12086 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| encephalomyocarditis virus | 105 | no rank | viruses | viruses | 12104 |
| foot-and-mouth disease virus o | 15 | no rank | viruses | viruses | 12118 |
| rhinovirus a2 | 21 | no rank | viruses | viruses | 12130 |
| human astrovirus 1 | 13 | no rank | viruses | viruses | 12456 |
| feline coronavirus | 31 | no rank | viruses | viruses | 12663 |
| human t-lymphotropic virus 3 | 11 | no rank | viruses | viruses | 28332 |
| human coronavirus oc43 | 29 | no rank | viruses | viruses | 31631 |
| ockelbo virus | 14 | no rank | viruses | viruses | 31699 |
| buffalopox virus | 7 | no rank | viruses | viruses | 32605 |
| african horse sickness virus 1 | 2 | no rank | viruses | viruses | 33714 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| nyando virus | 1 | no rank | viruses | viruses | 35316 |
| bluetongue virus 1 | 2 | no rank | viruses | viruses | 35327 |
| bovine rotavirus a | 1 | no rank | viruses | viruses | 35333 |
| venezuelan equine encephalitis virus (strain everglades fe3-7c) | -3 | no rank | viruses | viruses | 36383 |
| bovine calicivirus | 3 | no rank | viruses | viruses | 37300 |
| human parechovirus 2 | 16 | no rank | viruses | viruses | 39085 |
| kemerovo virus | 8 | no rank | viruses | viruses | 40064 |
| coxsackievirus a1 | 2 | no rank | viruses | viruses | 42779 |
| enterovirus d68 | 8 | no rank | viruses | viruses | 42789 |
| leptospira interrogans serovar copenhageni | 17 | no rank | bacteria | bacteria | 44275 |
| leptospira interrogans serovar pomona | 18 | no rank | bacteria | bacteria | 44276 |
| inkoo virus | 7 | no rank | viruses | viruses | 45269 |
| tahyna virus | 15 | no rank | viruses | viruses | 45270 |
| echovirus e1 | 22 | no rank | viruses | viruses | 46633 |
| turkish sheep encephalitis virus | -3 | no rank | viruses | viruses | 47300 |
| batken virus | 2 | no rank | viruses | viruses | 53017 |
| bovine viral diarrhea virus 2 | 26 | no rank | viruses | viruses | 54315 |
| swine hepatitis e virus | 25 | no rank | viruses | viruses | 63421 |
| porcine enterovirus 9 | 2 | no rank | viruses | viruses | 64141 |
| bussuquara virus | 2 | no rank | viruses | viruses | 64304 |
| red seabream iridovirus | 17 | no rank | viruses | viruses | 65424 |
| hu39694 virus | -3 | no rank | viruses | viruses | 69244 |
| lechiguanas virus | 1 | no rank | viruses | viruses | 69245 |
| oran virus | -3 | no rank | viruses | viruses | 69247 |
| rotavirus g1 | 10 | no rank | viruses | viruses | 72132 |
| igbo ora virus | 5 | no rank | viruses | viruses | 79899 |
| escherichia coli o157:h7 | 138 | no rank | bacteria | bacteria | 83334 |
| european catfish virus | 7 | no rank | viruses | viruses | 84739 |
| teschovirus a1 | 11 | no rank | viruses | viruses | 85506 |
| leptospira interrogans serovar icterohaemorrhagiae | 12 | no rank | bacteria | bacteria | 90062 |
| salmonella enterica subsp. enterica serovar typhi | 85 | no rank | bacteria | bacteria | 90370 |
| salmonella enterica subsp. enterica serovar typhimurium | 77 | no rank | bacteria | bacteria | 90371 |
| norwalk-like virus | 49 | no rank | viruses | viruses | 95340 |
| yellow head virus | 34 | no rank | viruses | viruses | 96029 |
| salmonella enterica subsp. enterica serovar dublin | 55 | no rank | bacteria | bacteria | 98360 |
| salmonella enterica subsp. enterica serovar newport | 26 | no rank | bacteria | bacteria | 108619 |
| norovirus gi | 1 | no rank | viruses | viruses | 122928 |
| columbid circovirus | 5 | no rank | viruses | viruses | 126070 |
| vibrio cholerae o1 | 65 | no rank | bacteria | bacteria | 127906 |
| duck adenovirus 1 | 9 | no rank | viruses | viruses | 130329 |
| araraquara virus | 5 | no rank | viruses | viruses | 139032 |
| salmonella enterica subsp. enterica serovar enteritidis | 87 | no rank | bacteria | bacteria | 149539 |
| sabo virus | -3 | no rank | viruses | viruses | 159138 |
| mycobacterium tuberculosis 210 | -3 | no rank | bacteria | bacteria | 164513 |
| escherichia coli o111:h- | 5 | no rank | bacteria | bacteria | 168927 |
| alkhumra hemorrhagic fever virus | 9 | no rank | viruses | viruses | 172148 |
| avian hepatitis e virus | 9 | no rank | viruses | viruses | 172851 |
| leptospira interrogans serovar autumnalis | 4 | no rank | bacteria | bacteria | 174157 |
| giardia lamblia atcc 50803 | -3 | no rank | invertebrates | protozoa | 184922 |
| hepatitis e virus type 1 | -3 | no rank | viruses | viruses | 185579 |
| seal parapoxvirus | 6 | no rank | viruses | viruses | 187984 |
| sarcoptes scabiei type hominis | 9 | no rank | invertebrates | | 197185 |
| sarcoptes scabiei type wombati | 5 | no rank | invertebrates | | 198574 |
| brucella suis 1330 | 11 | no rank | bacteria | bacteria | 204722 |
| human hepatitis a virus | 64 | no rank | viruses | viruses | 208726 |
| human respiratory syncytial virus b | 1 | no rank | viruses | viruses | 208895 |
| leptospira interrogans serovar canicola | 19 | no rank | bacteria | bacteria | 211880 |
| leptospira interrogans serovar hebdomadis | 1 | no rank | bacteria | bacteria | 211881 |
| leptospira interrogans serovar australis | 2 | no rank | bacteria | bacteria | 211882 |
| ibaraki virus | 9 | no rank | viruses | viruses | 225976 |
| sars coronavirus | 76 | no rank | viruses | viruses | 227859 |
| bovine viral diarrhea virus 1-osloss | 2 | no rank | viruses | viruses | 229907 |
| sapovirus mc114 | -3 | no rank | viruses | viruses | 234603 |
| small ruminant lentivirus | 10 | no rank | viruses | viruses | 254355 |
| bordetella pertussis tohama i | 5 | no rank | bacteria | bacteria | 257313 |
| measles virus genotype a | -3 | no rank | viruses | viruses | 262307 |
| sarcoptes scabiei type canis | 16 | no rank | invertebrates | | 268761 |
| sarcoptes scabiei type chimp | -3 | no rank | invertebrates | | 268762 |
| sarcoptes scabiei type wallaby | -3 | no rank | invertebrates | | 268763 |
| pneumonia virus of mice j3666 | -3 | no rank | viruses | viruses | 270473 |
| fort sherman virus | -3 | no rank | viruses | viruses | 273345 |
| xingu virus | -3 | no rank | viruses | viruses | 273348 |
| leptospira interrogans serovar grippotyphosa | 6 | no rank | bacteria | bacteria | 280498 |
| seoul virus bjhd01 | -3 | no rank | viruses | viruses | 280855 |
| leptospira interrogans serovar szwajizak | -3 | no rank | bacteria | bacteria | 312177 |
| rabbit calicivirus | 12 | no rank | viruses | viruses | 314539 |
| burkholderia mallei nctc 10247 | -3 | no rank | bacteria | bacteria | 320389 |
| avian nephritis virus 1 | -3 | no rank | viruses | viruses | 336960 |
| sarcoptes scabiei type suis | 11 | no rank | invertebrates | | 337908 |
| leptospira interrogans serovar bratislava | 8 | no rank | bacteria | bacteria | 338215 |
| leptospira borgpetersenii serovar hardjo-bovis | 4 | no rank | bacteria | bacteria | 338217 |
| leptospira interrogans serovar sejroe | 2 | no rank | bacteria | bacteria | 340110 |
| leptospira interrogans serovar ballum | 2 | no rank | bacteria | bacteria | 342794 |