| infectious bursal disease virus beh2003 | -3 | no rank | viruses | viruses | 551140 |
| streptococcus pneumoniae ap200 | -3 | no rank | bacteria | bacteria | 574093 |
| murine coronavirus inf-mhv-a59 | -3 | no rank | viruses | viruses | 591071 |
| caprine arthritis encephalitis virus ov496 | -3 | no rank | viruses | viruses | 621214 |
| alenquer virus | -3 | no rank | viruses | viruses | 629726 |
| legionella longbeachae d-4968 | -3 | no rank | bacteria | bacteria | 638315 |
| canine papillomavirus 5 | -3 | no rank | viruses | viruses | 658422 |
| giardia lamblia p15 | -3 | no rank | invertebrates | protozoa | 658858 |
| vibrio mimicus mb451 | -3 | no rank | bacteria | bacteria | 675806 |
| rhodococcus equi 103s | -3 | no rank | bacteria | bacteria | 685727 |
| sandfly fever turkey virus | -3 | no rank | viruses | viruses | 688699 |
| vaccinia virus mariana | 1 | no rank | viruses | viruses | 691321 |
| escherichia coli o157:h7 str. ec4009 | -3 | no rank | bacteria | bacteria | 702430 |
| listeria monocytogenes fsl f2-208 | -3 | no rank | bacteria | bacteria | 702458 |
| hepatitis c virus 08.40.072 | -3 | no rank | viruses | viruses | 761189 |
| mus musculus papillomavirus type 1 | -3 | no rank | viruses | viruses | 763552 |
| helicobacter pylori cuz20 | -3 | no rank | bacteria | bacteria | 765964 |
| neisseria meningitidis k1207 | -3 | no rank | bacteria | bacteria | 768485 |
| canary polyomavirus | 1 | no rank | viruses | viruses | 881945 |
| salehabad virus | -3 | no rank | viruses | viruses | 904699 |
| acinetobacter baumannii a118 | 1 | no rank | bacteria | bacteria | 927193 |
| taylorella equigenitalis mce9 | 1 | no rank | bacteria | bacteria | 937774 |
| neisseria gonorrhoeae tcdc-ng08107 | 1 | no rank | bacteria | bacteria | 940296 |
| shigella dysenteriae 1 | 42 | no rank | bacteria | bacteria | 984897 |
| sarcoptes scabiei var equi | -3 | no rank | | | |
| central european tickborne encephalitis virus | 2 | no rank | | viruses | |
| monongahela virus | 3 | no rank | | viruses | 2259728 |
| far eastern tick-borne encephalitis virus | 1 | no rank | | viruses | |
| candiru virus complex | -3 | no rank | | viruses | |
| polyopisthocotylea | 19 | order | invertebrates | | 40163 |
| cyanobacteria | 174 | phylum | bacteria | | 1117 |
| camelus dromedarius papillomavirus 1 | -3 | serotype | viruses | viruses | 996650 |
| borreliella burgdorferi | 144 | species | bacteria | bacteria | 139 |
| borrelia hermsii | 44 | species | bacteria | bacteria | 140 |
| borrelia parkeri | 13 | species | bacteria | bacteria | 141 |
| borrelia turicatae | 21 | species | bacteria | bacteria | 142 |
| treponema denticola | 58 | species | bacteria | bacteria | 158 |
| brachyspira hyodysenteriae | 46 | species | bacteria | bacteria | 159 |
| treponema pallidum | 87 | species | bacteria | bacteria | 160 |
| treponema phagedenis | 22 | species | bacteria | bacteria | 162 |
| leptospira interrogans | 49 | species | bacteria | bacteria | 173 |
| leptospira borgpetersenii | 18 | species | bacteria | bacteria | 174 |
| campylobacter coli | 65 | species | bacteria | bacteria | 195 |
| campylobacter fetus | 57 | species | bacteria | bacteria | 196 |
| campylobacter jejuni | 130 | species | bacteria | bacteria | 197 |
| campylobacter hyointestinalis | 23 | species | bacteria | bacteria | 198 |
| campylobacter concisus | 20 | species | bacteria | bacteria | 199 |
| campylobacter curvus | 11 | species | bacteria | bacteria | 200 |
| campylobacter lari | 35 | species | bacteria | bacteria | 201 |
| campylobacter rectus | 41 | species | bacteria | bacteria | 203 |
| campylobacter sputorum | 22 | species | bacteria | bacteria | 206 |
| helicobacter pylori | 246 | species | bacteria | bacteria | 210 |
| helicobacter cinaedi | 27 | species | bacteria | bacteria | 213 |
| helicobacter fennelliae | 16 | species | bacteria | bacteria | 215 |
| brucella abortus | 76 | species | bacteria | bacteria | 235 |
| brucella ovis | 30 | species | bacteria | bacteria | 236 |
| elizabethkingia meningoseptica | 44 | species | bacteria | bacteria | 238 |
| chryseobacterium balustinum | 10 | species | bacteria | bacteria | 246 |
| myroides odoratus | 15 | species | bacteria | bacteria | 256 |
| francisella tularensis | 74 | species | bacteria | bacteria | 263 |
| comamonas testosteroni | 50 | species | bacteria | bacteria | 285 |
| pseudomonas aeruginosa | 243 | species | bacteria | bacteria | 287 |
| burkholderia cepacia | 107 | species | bacteria | bacteria | 292 |
| brevundimonas diminuta | 54 | species | bacteria | bacteria | 293 |
| pseudomonas fluorescens | 122 | species | bacteria | bacteria | 294 |
| pseudomonas putida | 133 | species | bacteria | bacteria | 303 |
| pseudomonas stutzeri | 76 | species | bacteria | bacteria | 316 |
| ralstonia pickettii | 44 | species | bacteria | bacteria | 329 |
| pseudomonas pseudoalcaligenes | 41 | species | bacteria | bacteria | 330 |
| legionella pneumophila | 133 | species | bacteria | bacteria | 446 |
| fluoribacter bozemanae | 16 | species | bacteria | bacteria | 447 |
| legionella hackeliae | 3 | species | bacteria | bacteria | 449 |
| legionella longbeachae | 16 | species | bacteria | bacteria | 450 |
| tatlockia micdadei | 25 | species | bacteria | bacteria | 451 |
| legionella feeleii | 8 | species | bacteria | bacteria | 453 |
| legionella jordanis | 7 | species | bacteria | bacteria | 456 |
| legionella rubrilucens | 3 | species | bacteria | bacteria | 458 |
| fluoribacter dumoffii | 11 | species | bacteria | bacteria | 463 |
| fluoribacter gormanii | 14 | species | bacteria | bacteria | 464 |
| legionella maceachernii | 7 | species | bacteria | bacteria | 466 |
| acinetobacter baumannii | 88 | species | bacteria | bacteria | 470 |
| acinetobacter calcoaceticus | 77 | species | bacteria | bacteria | 471 |
| moraxella bovis | 35 | species | bacteria | bacteria | 476 |
| moraxella lacunata | 14 | species | bacteria | bacteria | 477 |
| moraxella nonliquefaciens | 16 | species | bacteria | bacteria | 478 |
| moraxella catarrhalis | 87 | species | bacteria | bacteria | 480 |
| neisseria cinerea | 17 | species | bacteria | bacteria | 483 |
| neisseria flavescens | 11 | species | bacteria | bacteria | 484 |
| neisseria gonorrhoeae | 136 | species | bacteria | bacteria | 485 |
| neisseria lactamica | 31 | species | bacteria | bacteria | 486 |
| neisseria meningitidis | 130 | species | bacteria | bacteria | 487 |
| neisseria mucosa | 14 | species | bacteria | bacteria | 488 |
| neisseria sicca | 14 | species | bacteria | bacteria | 490 |
| neisseria elongata | 9 | species | bacteria | bacteria | 495 |
| kingella denitrificans | 9 | species | bacteria | bacteria | 502 |
| kingella kingae | 27 | species | bacteria | bacteria | 504 |
| bordetella bronchiseptica | 55 | species | bacteria | bacteria | 518 |
| bordetella parapertussis | 37 | species | bacteria | bacteria | 519 |
| bordetella pertussis | 122 | species | bacteria | bacteria | 520 |
| bordetella avium | 21 | species | bacteria | bacteria | 521 |