| acaricomes | 3 | genus | bacteria | | 291967 |
| avibacterium | 4 | genus | bacteria | | 292486 |
| candidatus rhabdochlamydia | 8 | genus | bacteria | | 292833 |
| elizabethkingia | 5 | genus | bacteria | | 308865 |
| megalocytivirus | 9 | genus | viruses | | 308906 |
| amdoparvovirus | 1 | genus | viruses | | 310911 |
| bocavirus | 39 | genus | viruses | | 310912 |
| isavirus | 9 | genus | viruses | | 324913 |
| deltapapillomavirus | 2 | genus | viruses | | 325454 |
| gammapapillomavirus | 2 | genus | viruses | | 325455 |
| kappapapillomavirus | -3 | genus | viruses | | 325457 |
| epsilonpapillomavirus | 1 | genus | viruses | | 325459 |
| omikronpapillomavirus | 1 | genus | viruses | | 325461 |
| lambdapapillomavirus | 2 | genus | viruses | | 325462 |
| parastreptomyces | 1 | genus | bacteria | | 329648 |
| alphapapillomavirus | 2 | genus | viruses | | 333750 |
| zetapapillomavirus | -3 | genus | viruses | | 333918 |
| xipapillomavirus | 2 | genus | viruses | | 333921 |
| betapapillomavirus | 10 | genus | viruses | | 333922 |
| mupapillomavirus | -3 | genus | viruses | | 334202 |
| pipapillomavirus | 2 | genus | viruses | | 334211 |
| thetapapillomavirus | -3 | genus | viruses | | 334213 |
| crepidostomum | 13 | genus | invertebrates | | 334452 |
| granulibacter | 9 | genus | bacteria | | 364409 |
| spaniopsis | 1 | genus | invertebrates | | 375791 |
| cronobacter | 10 | genus | bacteria | | 413496 |
| acanthopleuribacter | 1 | genus | bacteria | | 442869 |
| nupapillomavirus | -3 | genus | viruses | | 475861 |
| bibersteinia | 3 | genus | bacteria | | 476528 |
| spirobacillus | 4 | genus | bacteria | | 495819 |
| aliivibrio | 6 | genus | bacteria | | 511678 |
| eustrongylides | 15 | genus | invertebrates | | 513041 |
| rictularia | 5 | genus | | | |
| cheilospirura | 5 | genus | | | |
| ambiphyra | -3 | genus | | | |
| bolbosoma | 8 | genus | | | 1155702 |
| stephanofilaria | 3 | genus | | | |
| globocephalus | 7 | genus | | | |
| actiomadura | -3 | genus | | | |
| grammocephalus | 3 | genus | | | |
| mima | 29 | genus | | | |
| ascocotyle | 13 | genus | invertebrates | helminths | |
| leptospira interrogans serovar hardjo | 27 | no rank | bacteria | bacteria | 176 |
| salmonella enterica subsp. enterica serovar gallinarum | 27 | no rank | bacteria | bacteria | 594 |
| salmonella enterica subsp. enterica serovar pullorum | 22 | no rank | bacteria | bacteria | 605 |
| salmonella enterica subsp. enterica serovar abortusequi | 27 | no rank | bacteria | bacteria | 607 |
| canine adenovirus 2 | 18 | no rank | viruses | viruses | 10514 |
| human adenovirus 1 | 24 | no rank | viruses | viruses | 10533 |
| fowl aviadenovirus 1 | 23 | no rank | viruses | viruses | 10553 |
| feline panleukopenia virus | 46 | no rank | viruses | viruses | 10786 |
| canine parvovirus | 65 | no rank | viruses | viruses | 10788 |
| african horse sickness virus 9 | 6 | no rank | viruses | viruses | 10897 |
| human rotavirus a | 14 | no rank | viruses | viruses | 10941 |
| porcine rotavirus a | 2 | no rank | viruses | viruses | 10967 |
| lelystad virus | 59 | no rank | viruses | viruses | 11049 |
| dengue virus 1 | 29 | no rank | viruses | viruses | 11053 |
| dengue virus 2 | 61 | no rank | viruses | viruses | 11060 |
| kunjin virus | 46 | no rank | viruses | viruses | 11077 |
| infectious bronchitis virus | 66 | no rank | viruses | viruses | 11120 |
| bovine coronavirus | 50 | no rank | viruses | viruses | 11128 |
| porcine respiratory coronavirus | 34 | no rank | viruses | viruses | 11146 |
| transmissible gastroenteritis virus | 60 | no rank | viruses | viruses | 11149 |
| turkey coronavirus | 37 | no rank | viruses | viruses | 11152 |
| canine coronavirus | 32 | no rank | viruses | viruses | 11153 |
| parainfluenza virus 5 | 65 | no rank | viruses | viruses | 2905673 |
| turkey rhinotracheitis virus | 35 | no rank | viruses | viruses | 11264 |
| viral hemorrhagic septicemia virus | 46 | no rank | viruses | viruses | 11287 |
| infectious hematopoietic necrosis virus | 41 | no rank | viruses | viruses | 11290 |
| toscana virus | 23 | no rank | viruses | viruses | 11590 |
| human t-lymphotropic virus 1 | 137 | no rank | viruses | viruses | 11908 |
| human t-lymphotropic virus 2 | 60 | no rank | viruses | viruses | 11909 |
| avian leukemia virus | 22 | no rank | viruses | viruses | 11946 |
| human parechovirus 1 | 29 | no rank | viruses | viruses | 12063 |
| swine vesicular disease virus | 23 | no rank | viruses | viruses | 12075 |
| poliovirus 1 | 47 | no rank | viruses | viruses | 12080 |
| human poliovirus 1 strain sabin | 2 | no rank | viruses | viruses | 12082 |
| poliovirus 2 | 26 | no rank | viruses | viruses | 12083 |
| poliovirus 3 | 29 | no rank | viruses | viruses | 12086 |
| enterovirus d70 | 24 | no rank | viruses | viruses | 12090 |
| encephalomyocarditis virus | 105 | no rank | viruses | viruses | 12104 |
| foot-and-mouth disease virus o | 15 | no rank | viruses | viruses | 12118 |
| rhinovirus a2 | 21 | no rank | viruses | viruses | 12130 |
| human astrovirus 1 | 13 | no rank | viruses | viruses | 12456 |
| feline coronavirus | 31 | no rank | viruses | viruses | 12663 |
| human t-lymphotropic virus 3 | 11 | no rank | viruses | viruses | 28332 |
| human coronavirus oc43 | 29 | no rank | viruses | viruses | 31631 |
| ockelbo virus | 14 | no rank | viruses | viruses | 31699 |
| buffalopox virus | 7 | no rank | viruses | viruses | 32605 |
| african horse sickness virus 1 | 2 | no rank | viruses | viruses | 33714 |
| california encephalitis virus | 28 | no rank | viruses | viruses | 35305 |
| nyando virus | 1 | no rank | viruses | viruses | 35316 |
| bluetongue virus 1 | 2 | no rank | viruses | viruses | 35327 |
| bovine rotavirus a | 1 | no rank | viruses | viruses | 35333 |
| venezuelan equine encephalitis virus (strain everglades fe3-7c) | -3 | no rank | viruses | viruses | 36383 |
| bovine calicivirus | 3 | no rank | viruses | viruses | 37300 |
| human parechovirus 2 | 16 | no rank | viruses | viruses | 39085 |
| kemerovo virus | 8 | no rank | viruses | viruses | 40064 |
| coxsackievirus a1 | 2 | no rank | viruses | viruses | 42779 |
| enterovirus d68 | 8 | no rank | viruses | viruses | 42789 |
| leptospira interrogans serovar copenhageni | 17 | no rank | bacteria | bacteria | 44275 |