| strongyloides fuelleborni | 12 | species | invertebrates | helminths | 44441 |
| borrelia persica | 5 | species | bacteria | bacteria | 44448 |
| borrelia recurrentis | 21 | species | bacteria | bacteria | 44449 |
| dictyocaulus filaria | 10 | species | invertebrates | helminths | 44603 |
| dictyocaulus eckerti | 6 | species | invertebrates | helminths | 44604 |
| new york virus | 7 | species | viruses | viruses | 44755 |
| legionella lansingensis | 1 | species | bacteria | bacteria | 45067 |
| setosphaeria rostrata | 2 | species | plants | fungi | 45150 |
| guanarito mammarenavirus | 15 | species | viruses | viruses | 45219 |
| sarocladium kiliense | 11 | species | plants | fungi | 45277 |
| alternaria infectoria | 12 | species | plants | fungi | 45303 |
| [candida] intermedia | 14 | species | plants | fungi | 45354 |
| [candida] haemulonis | 9 | species | plants | fungi | 45357 |
| mycoplasma conjunctivae | 14 | species | bacteria | bacteria | 45361 |
| chrysomya rufifacies | 20 | species | invertebrates | fly | 45450 |
| teladorsagia circumcincta | 53 | species | invertebrates | helminths | 45464 |
| candida catenulata | 13 | species | plants | fungi | 45537 |
| sabia mammarenavirus | 9 | species | viruses | viruses | 45709 |
| trichinella britovi | 23 | species | invertebrates | helminths | 45882 |
| nocardia pseudobrasiliensis | 8 | species | bacteria | bacteria | 45979 |
| granulicatella adiacens | 17 | species | bacteria | bacteria | 46124 |
| abiotrophia defectiva | 17 | species | bacteria | bacteria | 46125 |
| staphylococcus chromogenes | 19 | species | bacteria | bacteria | 46126 |
| porcine circovirus | 65 | species | viruses | viruses | 46221 |
| aspergillus versicolor | 33 | species | plants | fungi | 46472 |
| parabacteroides merdae | 7 | species | bacteria | bacteria | 46503 |
| bacteroides stercoris | 7 | species | bacteria | bacteria | 46506 |
| ascaridia galli | 22 | species | invertebrates | helminths | 46685 |
| fasciola gigantica | 23 | species | invertebrates | helminths | 46835 |
| colorado tick fever virus | 17 | species | viruses | viruses | 46839 |
| clostridium chauvoei | 15 | species | bacteria | bacteria | 46867 |
| equine rhinitis a virus | 11 | species | viruses | viruses | 47000 |
| tsukamurella pulmonis | 5 | species | bacteria | bacteria | 47312 |
| borrelia miyamotoi | 8 | species | bacteria | bacteria | 47466 |
| bacteroides caccae | 9 | species | bacteria | bacteria | 47678 |
| bibersteinia trehalosi | 12 | species | bacteria | bacteria | 47735 |
| echinostoma hortense | 5 | species | invertebrates | helminths | 48216 |
| echinostoma revolutum | 23 | species | invertebrates | helminths | 48217 |
| schistosoma margrebowiei | 9 | species | invertebrates | helminths | 48269 |
| setaria digitata | 10 | species | invertebrates | helminths | 48799 |
| haemaphysalis inermis | 9 | species | invertebrates | tick | 48827 |
| archaeopsylla erinacei | 8 | species | invertebrates | flea | 48909 |
| dermacentor marginatus | 19 | species | invertebrates | tick | 49202 |
| haemaphysalis punctata | 14 | species | invertebrates | tick | 49204 |
| psittacid herpesvirus 1 | 5 | species | viruses | viruses | 50294 |
| ctenocephalides canis | 12 | species | invertebrates | flea | 50434 |
| ancylostoma duodenale | 25 | species | invertebrates | helminths | 51022 |
| enterobius vermicularis | 24 | species | invertebrates | helminths | 51028 |
| necator americanus | 46 | species | invertebrates | helminths | 51031 |
| [eubacterium] saphenum | 8 | species | bacteria | bacteria | 51123 |
| kluyvera ascorbata | 18 | species | bacteria | bacteria | 51288 |
| eimeria brunetti | 15 | species | invertebrates | protozoa | 51314 |
| eimeria necatrix | 19 | species | invertebrates | protozoa | 51315 |
| prevotella dentalis | 7 | species | bacteria | bacteria | 52227 |
| sarcoptes scabiei | 34 | species | invertebrates | | 52283 |
| plasmodium inui | 10 | species | invertebrates | protozoa | 52288 |
| oesophagostomum radiatum | 18 | species | invertebrates | helminths | 52565 |
| brachyspira pilosicoli | 29 | species | bacteria | bacteria | 52584 |
| actinomyces georgiae | 5 | species | bacteria | bacteria | 52768 |
| actinomyces gerencseriae | 12 | species | bacteria | bacteria | 52769 |
| actinomyces meyeri | 12 | species | bacteria | bacteria | 52773 |
| ostertagia leptospicularis | 10 | species | invertebrates | helminths | 52815 |
| strongylus asini | 2 | species | invertebrates | helminths | 52887 |
| ancylostoma ceylanicum | 20 | species | invertebrates | helminths | 53326 |
| ancylostoma tubaeforme | 12 | species | invertebrates | helminths | 53327 |
| trichostrongylus probolurus | 3 | species | invertebrates | helminths | 53330 |
| trichostrongylus rugatus | 6 | species | invertebrates | helminths | 53331 |
| enterococcus durans | 29 | species | bacteria | bacteria | 53345 |
| enterococcus mundtii | 18 | species | bacteria | bacteria | 53346 |
| schistosoma malayensis | 4 | species | invertebrates | helminths | 53353 |
| pichia fermentans | 12 | species | plants | fungi | 53655 |
| eimeria mivati | 14 | species | invertebrates | protozoa | 54117 |
| gb virus c | 69 | species | viruses | viruses | 54290 |
| raoultella ornithinolytica | 8 | species | bacteria | bacteria | 54291 |
| salmonella bongori | 18 | species | bacteria | bacteria | 54736 |
| phyllosticta citricarpa | 10 | species | plants | fungi | 55181 |
| malassezia furfur | 48 | species | plants | fungi | 55194 |
| metastrongylus pudendotectus | 5 | species | invertebrates | helminths | 55275 |
| metastrongylus salmi | 3 | species | invertebrates | helminths | 55276 |
| mycobacterium avium-intracellulare | 20 | species | bacteria | bacteria | 55883 |
| infectious salmon anemia virus | 32 | species | viruses | viruses | 55987 |
| triaenophorus nodulosus | 9 | species | invertebrates | helminths | 56557 |
| mycobacterium mucogenicum | 11 | species | bacteria | bacteria | 56689 |
| tritrichomonas suis | 10 | species | invertebrates | protozoa | 56690 |
| trichomonas gallinae | 19 | species | invertebrates | protozoa | 56777 |
| drechslera biseptata | 2 | species | plants | fungi | 56819 |
| dermacentor reticulatus | 22 | species | invertebrates | tick | 57047 |
| dicrocoelium dendriticum | 19 | species | invertebrates | helminths | 57078 |
| fusarium dimerum | 9 | species | plants | fungi | 57145 |
| posthodiplostomum minimum | 14 | species | invertebrates | helminths | 57260 |
| mycoplasma suis | 19 | species | bacteria | bacteria | 57372 |
| european bat lyssavirus 1 | 19 | species | viruses | viruses | 57482 |
| european bat lyssavirus 2 | 14 | species | viruses | viruses | 57483 |
| tsukamurella tyrosinosolvens | 4 | species | bacteria | bacteria | 57704 |
| citrobacter braakii | 10 | species | bacteria | bacteria | 57706 |
| rhizopus microsporus | 25 | species | plants | fungi | 58291 |
| encephalitozoon intestinalis | 43 | species | plants | fungi | 58839 |
| porrocaecum depressum | 1 | species | invertebrates | helminths | 59262 |
| toxascaris leonina | 22 | species | invertebrates | helminths | 59264 |
| getah virus | 11 | species | viruses | viruses | 59300 |