| prevotella intermedia | 65 | species | bacteria | bacteria | 28131 |
| prevotella melaninogenica | 28 | species | bacteria | bacteria | 28132 |
| prevotella nigrescens | 37 | species | bacteria | bacteria | 28133 |
| prevotella oralis | 18 | species | bacteria | bacteria | 28134 |
| prevotella oris | 13 | species | bacteria | bacteria | 28135 |
| prevotella oulorum | 4 | species | bacteria | bacteria | 28136 |
| prevotella veroralis | 7 | species | bacteria | bacteria | 28137 |
| cronobacter sakazakii | 43 | species | bacteria | bacteria | 28141 |
| serratia proteamaculans | 17 | species | bacteria | bacteria | 28151 |
| yersinia kristensenii | 11 | species | bacteria | bacteria | 28152 |
| bisgaard taxon 13 | 1 | species | bacteria | bacteria | 28155 |
| bisgaard taxon 2 | -3 | species | bacteria | bacteria | 28157 |
| leptospira noguchii | 5 | species | bacteria | bacteria | 28182 |
| leptospira santarosai | 7 | species | bacteria | bacteria | 28183 |
| leptospira weilii | 3 | species | bacteria | bacteria | 28184 |
| capnocytophaga canimorsus | 18 | species | bacteria | bacteria | 28188 |
| capnocytophaga cynodegmi | 4 | species | bacteria | bacteria | 28189 |
| arcobacter butzleri | 37 | species | bacteria | bacteria | 28197 |
| arcobacter cryaerophilus | 26 | species | bacteria | bacteria | 28198 |
| ornithobacterium rhinotracheale | 20 | species | bacteria | bacteria | 28251 |
| arcanobacterium haemolyticum | 22 | species | bacteria | bacteria | 28264 |
| porcine reproductive and respiratory syndrome virus | 65 | species | viruses | viruses | 28344 |
| neisseria subflava | 14 | species | bacteria | bacteria | 28449 |
| burkholderia pseudomallei | 61 | species | bacteria | bacteria | 28450 |
| talaromyces purpureogenus | 25 | species | plants | fungi | 1266744 |
| nematodirus battus | 19 | species | invertebrates | helminths | 28839 |
| moniezia expansa | 31 | species | invertebrates | helminths | 28841 |
| diphyllobothrium dendriticum | 24 | species | invertebrates | helminths | 28845 |
| camelpox virus | 21 | species | viruses | viruses | 28873 |
| rotavirus a | 58 | species | viruses | viruses | 28875 |
| rotavirus b | 22 | species | viruses | viruses | 28876 |
| salmonella enterica | 107 | species | bacteria | bacteria | 28901 |
| mycoplasma bovis | 34 | species | bacteria | bacteria | 28903 |
| ancylostoma caninum | 48 | species | invertebrates | helminths | 29170 |
| dictyocaulus viviparus | 29 | species | invertebrates | helminths | 29172 |
| neospora caninum | 72 | species | invertebrates | protozoa | 29176 |
| mycobacterium haemophilum | 26 | species | bacteria | bacteria | 29311 |
| mycobacterium shimoidei | 3 | species | bacteria | bacteria | 29313 |
| staphylococcus saprophyticus | 42 | species | bacteria | bacteria | 29385 |
| gemella morbillorum | 18 | species | bacteria | bacteria | 29391 |
| legionella oakridgensis | 4 | species | bacteria | bacteria | 29423 |
| acinetobacter haemolyticus | 15 | species | bacteria | bacteria | 29430 |
| psychrobacter phenylpyruvicus | 11 | species | bacteria | bacteria | 29432 |
| moraxella ovis | 11 | species | bacteria | bacteria | 29433 |
| brucella melitensis | 52 | species | bacteria | bacteria | 29459 |
| brucella suis | 38 | species | bacteria | bacteria | 29461 |
| veillonella parvula | 36 | species | bacteria | bacteria | 29466 |
| yersinia frederiksenii | 11 | species | bacteria | bacteria | 29484 |
| yersinia rohdei | 3 | species | bacteria | bacteria | 29485 |
| yersinia ruckeri | 36 | species | bacteria | bacteria | 29486 |
| vibrio furnissii | 25 | species | bacteria | bacteria | 29494 |
| mycoplasma haemofelis | 29 | species | bacteria | bacteria | 29501 |
| leptospira inadai | 6 | species | bacteria | bacteria | 29506 |
| leptospira kirschneri | 13 | species | bacteria | bacteria | 29507 |
| leptospira meyeri | 11 | species | bacteria | bacteria | 29508 |
| borreliella afzelii | 46 | species | bacteria | bacteria | 29518 |
| borreliella garinii | 49 | species | bacteria | bacteria | 29519 |
| borrelia crocidurae | 13 | species | bacteria | bacteria | 29520 |
| porphyromonas circumdentaria | 7 | species | bacteria | bacteria | 29524 |
| lawsonia intracellularis | 32 | species | bacteria | bacteria | 29546 |
| mycoplasma canadense | 7 | species | bacteria | bacteria | 29554 |
| mycoplasma hyosynoviae | 12 | species | bacteria | bacteria | 29559 |
| mycoplasma meleagridis | 18 | species | bacteria | bacteria | 29561 |
| mycoplasma ovipneumoniae | 13 | species | bacteria | bacteria | 29562 |
| taylorella equigenitalis | 15 | species | bacteria | bacteria | 29575 |
| tubercularia vulgaris | 4 | species | plants | fungi | 29877 |
| cystobasidium minutum | 16 | species | plants | fungi | 29899 |
| sporothrix schenckii | 40 | species | plants | fungi | 29908 |
| cladosporium cladosporioides | 29 | species | plants | fungi | 29917 |
| cladosporium oxysporum | 8 | species | plants | fungi | 29919 |
| ixodes pacificus | 36 | species | invertebrates | tick | 29930 |
| dirofilaria repens | 18 | species | invertebrates | helminths | 31241 |
| schistosoma mattheei | 17 | species | invertebrates | helminths | 31246 |
| enterocytozoon bieneusi | 54 | species | plants | fungi | 31281 |
| peste-des-petits-ruminants virus | 32 | species | viruses | viruses | 31604 |
| amycolatopsis orientalis | 31 | species | bacteria | bacteria | 31958 |
| babesia divergens | 31 | species | invertebrates | protozoa | 32595 |
| acanthamoeba rhysodes | 5 | species | invertebrates | protozoa | 32599 |
| human herpesvirus 6a | 12 | species | viruses | viruses | 32603 |
| actinomyces neuii | 8 | species | bacteria | bacteria | 33007 |
| propionibacterium avidum | 11 | species | bacteria | bacteria | 33010 |
| propionibacterium granulosum | 18 | species | bacteria | bacteria | 33011 |
| anaerococcus lactolyticus | 5 | species | bacteria | bacteria | 33032 |
| parvimonas micra | 42 | species | bacteria | bacteria | 33033 |
| anaerococcus prevotii | 17 | species | bacteria | bacteria | 33034 |
| blautia producta | 23 | species | bacteria | bacteria | 33035 |
| anaerococcus vaginalis | 4 | species | bacteria | bacteria | 33037 |
| streptococcus milleri | 39 | species | bacteria | bacteria | 33040 |
| bartonella vinsonii | 30 | species | bacteria | bacteria | 33047 |
| neisseria perflava | 15 | species | bacteria | bacteria | 33053 |
| yersinia mollaretii | 4 | species | bacteria | bacteria | 33060 |
| entamoeba invadens | 28 | species | invertebrates | protozoa | 33085 |
| purpureocillium lilacinum | 30 | species | plants | fungi | 33203 |
| babesia gibsoni | 29 | species | invertebrates | protozoa | 33632 |
| kyasanur forest disease virus | 13 | species | viruses | viruses | 33743 |
| echovirus | 57 | species | viruses | viruses | 33758 |
| mycobacterium africanum | 28 | species | bacteria | bacteria | 33894 |
| mycoplasma felis | 11 | species | bacteria | bacteria | 33923 |
| enterococcus avium | 20 | species | bacteria | bacteria | 33945 |
| melissococcus plutonius | 11 | species | bacteria | bacteria | 33970 |