| equine encephalosis virus | 9 | species | viruses | viruses | 201490 |
| bovine enteric calicivirus | 6 | species | viruses | viruses | 206156 |
| sandfly fever naples virus | 4 | species | viruses | viruses | 206160 |
| seadornavirus | 7 | genus | viruses | | 208294 |
| human hepatitis a virus | 64 | no rank | viruses | viruses | 208726 |
| human respiratory syncytial virus b | 1 | no rank | viruses | viruses | 208895 |
| macrobrachium rosenbergii nodavirus | 10 | species | viruses | viruses | 222557 |
| ibaraki virus | 9 | no rank | viruses | viruses | 225976 |
| gyrovirus | 5 | genus | viruses | | 227307 |
| sars coronavirus | 76 | no rank | viruses | viruses | 227859 |
| bovine viral diarrhea virus 1-osloss | 2 | no rank | viruses | viruses | 229907 |
| sapovirus mc114 | -3 | no rank | viruses | viruses | 234603 |
| psittacid herpesvirus 2 | 3 | species | viruses | viruses | 240874 |
| psittacid herpesvirus 3 | -3 | species | viruses | viruses | 240876 |
| psittacid herpesvirus 4 | -3 | species | viruses | viruses | 240877 |
| hughes virus | 4 | species | viruses | viruses | 248052 |
| mamastrovirus | 5 | genus | viruses | | 249588 |
| avastrovirus | 1 | genus | viruses | | 249589 |
| ovine progressive pneumonia virus | 12 | species | viruses | viruses | 253923 |
| small ruminant lentivirus | 10 | no rank | viruses | viruses | 254355 |
| avulavirus | 7 | genus | viruses | | 260963 |
| henipavirus | 19 | genus | viruses | | 260964 |
| measles virus genotype a | -3 | no rank | viruses | viruses | 262307 |
| pneumonia virus of mice j3666 | -3 | no rank | viruses | viruses | 270473 |
| fort sherman virus | -3 | no rank | viruses | viruses | 273345 |
| xingu virus | -3 | no rank | viruses | viruses | 273348 |
| wyeomyia virus | 1 | species | viruses | viruses | 273350 |
| seoul virus bjhd01 | -3 | no rank | viruses | viruses | 280855 |
| human coronavirus hku1 | 15 | species | viruses | viruses | 290028 |
| marituba virus | 5 | species | viruses | viruses | 292278 |
| turkey siadenovirus a | 1 | species | viruses | viruses | 298333 |
| megalocytivirus | 9 | genus | viruses | | 308906 |
| amdoparvovirus | 1 | genus | viruses | | 310911 |
| bocavirus | 39 | genus | viruses | | 310912 |
| rabbit calicivirus | 12 | no rank | viruses | viruses | 314539 |
| human t-lymphotropic virus 4 | 2 | species | viruses | viruses | 318279 |
| isavirus | 9 | genus | viruses | | 324913 |
| deltapapillomavirus | 2 | genus | viruses | | 325454 |
| gammapapillomavirus | 2 | genus | viruses | | 325455 |
| kappapapillomavirus | -3 | genus | viruses | | 325457 |
| epsilonpapillomavirus | 1 | genus | viruses | | 325459 |
| omikronpapillomavirus | 1 | genus | viruses | | 325461 |
| lambdapapillomavirus | 2 | genus | viruses | | 325462 |
| alphapapillomavirus | 2 | genus | viruses | | 333750 |
| zetapapillomavirus | -3 | genus | viruses | | 333918 |
| xipapillomavirus | 2 | genus | viruses | | 333921 |
| betapapillomavirus | 10 | genus | viruses | | 333922 |
| mupapillomavirus | -3 | genus | viruses | | 334202 |
| pipapillomavirus | 2 | genus | viruses | | 334211 |
| thetapapillomavirus | -3 | genus | viruses | | 334213 |
| rotavirus d | -3 | species | viruses | viruses | 335100 |
| turkeypox virus | 2 | species | viruses | viruses | 336486 |
| avian nephritis virus 1 | -3 | no rank | viruses | viruses | 336960 |
| deltapapillomavirus 4 | 45 | species | viruses | viruses | 337052 |
| restan virus | 1 | no rank | viruses | viruses | 348011 |
| madrid virus | 1 | species | viruses | viruses | 348013 |
| chick syncytial virus | 3 | species | viruses | viruses | 353768 |
| border disease virus | 38 | species | viruses | viruses | 358764 |
| turkey astrovirus 1 | 5 | no rank | viruses | viruses | 364370 |
| anajatuba virus | 1 | no rank | viruses | viruses | 379964 |
| european sheatfish virus | 4 | no rank | viruses | viruses | 380179 |
| bovine viral diarrhea virus 3 | 2 | species | viruses | viruses | 381707 |
| sars coronavirus gdh-bjh01 | -3 | no rank | viruses | viruses | 388737 |
| horsepox virus | 1 | no rank | viruses | viruses | 397342 |
| murine rotavirus a | -3 | no rank | viruses | viruses | 418976 |
| juquitiba virus | 2 | species | viruses | viruses | 430511 |
| west nile virus h442 | -3 | no rank | viruses | viruses | 449280 |
| hantaanvirus cghu1 | -3 | no rank | viruses | viruses | 470918 |
| nupapillomavirus | -3 | genus | viruses | | 475861 |
| hbv genotype a | 26 | no rank | viruses | viruses | 489455 |
| chapare mammarenavirus | 2 | species | viruses | viruses | 499556 |
| equine papillomavirus 2 | 1 | species | viruses | viruses | 526413 |
| infectious bursal disease virus beh2003 | -3 | no rank | viruses | viruses | 551140 |
| bundibugyo ebolavirus | 2 | species | viruses | viruses | 565995 |
| astrovirus mlb1 | 3 | species | viruses | viruses | 568715 |
| feline poxvirus ita2_bc | -3 | species | viruses | viruses | 580061 |
| murine coronavirus inf-mhv-a59 | -3 | no rank | viruses | viruses | 591071 |
| tacaiuma virus | 2 | species | viruses | viruses | 611707 |
| caprine arthritis encephalitis virus ov496 | -3 | no rank | viruses | viruses | 621214 |
| candiru virus | -3 | species | viruses | viruses | 629725 |
| alenquer virus | -3 | no rank | viruses | viruses | 629726 |
| chagres virus | 2 | species | viruses | viruses | 629727 |
| lujo mammarenavirus | 1 | species | viruses | viruses | 649188 |
| feline sarcoid-associated papillomavirus | 1 | species | viruses | viruses | 655222 |
| canine papillomavirus 5 | -3 | no rank | viruses | viruses | 658422 |
| quaranfil virus | 3 | species | viruses | viruses | 688436 |
| salivirus mn-2a | -3 | species | viruses | viruses | 688450 |
| sandfly fever turkey virus | -3 | no rank | viruses | viruses | 688699 |
| vaccinia virus mariana | 1 | no rank | viruses | viruses | 691321 |
| bovine rhinitis b virus | 1 | species | viruses | viruses | 693066 |
| avian coronavirus | 35 | species | viruses | viruses | 694014 |
| spring viraemia of carp virus | 21 | species | viruses | viruses | 696863 |
| circoviridae ng24 | -3 | species | viruses | viruses | 745094 |
| hepatitis c virus 08.40.072 | -3 | no rank | viruses | viruses | 761189 |
| mus musculus papillomavirus type 1 | -3 | no rank | viruses | viruses | 763552 |
| canary polyomavirus | 1 | no rank | viruses | viruses | 881945 |
| salehabad virus | -3 | no rank | viruses | viruses | 904699 |
| camelus dromedarius papillomavirus 1 | -3 | serotype | viruses | viruses | 996650 |