| acanthocheilonema reconditum | Yes | species | eukaryota | invertebrates | species | 114234 | click here |
| acinetobacter lwoffii | Yes | species | bacteria | bacteria | species | 28090 | click here |
| aeromonas hydrophila | Yes | species | bacteria | bacteria | species | 644 | click here |
| alcaligenes faecalis | Yes | species | bacteria | bacteria | species | 511 | click here |
| alongshan virus | Yes | species | | | species | 2269360 | click here |
| american dog tick associated virus-1 | Yes | species | | | species | 2079611 | click here |
| american dog tick associated virus-2 | Yes | species | | | species | 2079608 | click here |
| american dog tick phlebovirus | Yes | species | | | species | 1517960 | click here |
| american dog tick rhabdovirus-2 | Yes | species | | | species | 2079610 | click here |
| anaplasma bovis | Yes | species | bacteria | bacteria | species | 186733 | click here |
| anaplasma centrale | Yes | species | bacteria | bacteria | species | 769 | click here |
| anaplasma cf. platys | Yes | species | | | species | 2052602 | click here |
| anaplasma marginale | Yes | species | bacteria | bacteria | species | 770 | click here |
| anaplasma marginale str. st. maries | Yes | no rank | bacteria | bacteria | no rank | 234826 | click here |
| anaplasma ovis | Yes | species | bacteria | bacteria | species | 142058 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| anaplasma platys | Yes | species | bacteria | bacteria | species | 949 | click here |
| anaplasma sp. | Yes | species | bacteria | bacteria | species | 1872535 | click here |
| anaplasma sp. bl099-6 | Yes | no rank | | | species | 1556293 | click here |
| anaplasma sp. hlj-14 | Yes | no rank | | | species | 1562740 | click here |
| anaplasma sp. 'ivoriense tci149' | Yes | no rank | | | species | 1779475 | click here |
| anaplasma sp. ma-2007 | Yes | no rank | bacteria | bacteria | species | 479129 | click here |
| anaplasma sp. ree16 | Yes | no rank | bacteria | bacteria | species | 598560 | click here |
| anaplasma sp. ree1f | Yes | no rank | | | species | 1436740 | click here |
| anaplasma sp. rg4m | Yes | no rank | | | species | 1436739 | click here |
| anaplasma sp. tc250-2 | Yes | no rank | | | species | 1556296 | click here |
| antioquia tymovirus-like 1 | Yes | species | | | species | 2730578 | click here |
| apicomplexa sp. bcs-2013c | Yes | no rank | | | species | 1298397 | click here |
| apicomplexa sp. bcs-2013d | Yes | no rank | | | species | 1298398 | click here |
| arsenophonus endosymbiont of dermacentor silvarum | Yes | species | | | species | 1968567 | click here |
| arsenophonus endosymbiont of dermacentor variabilis | Yes | no rank | bacteria | bacteria | species | 228913 | click here |
| aspergillus flavus | Yes | species | eukaryota | plants | species | 5059 | click here |
| babesia annae | Yes | species | eukaryota | invertebrates | species | 1811913 | click here |
| babesia argentina | Yes | species | | | species | | click here |
| babesia berbera | Yes | species | | | species | | click here |
| babesia bigemina | Yes | species | eukaryota | invertebrates | species | 5866 | click here |
| babesia bovis | Yes | species | eukaryota | invertebrates | species | 5865 | click here |
| babesia caballi | Yes | species | eukaryota | invertebrates | species | 5871 | click here |
| babesia canis | Yes | species | eukaryota | invertebrates | species | 5867 | click here |
| babesia canis canis | Yes | subspecies | eukaryota | invertebrates | subspecies | 167443 | click here |
| babesia canis rossi | Yes | subspecies | eukaryota | invertebrates | subspecies | 167444 | click here |
| babesia canis vogeli | Yes | subspecies | eukaryota | invertebrates | subspecies | 167445 | click here |
| babesia capreoli | Yes | species | eukaryota | invertebrates | species | 308426 | click here |
| babesia cf. microti | Yes | subspecies | eukaryota | invertebrates | species | 196495 | click here |
| babesia crassa | Yes | species | eukaryota | invertebrates | species | 237579 | click here |
| babesia divergens | Yes | species | eukaryota | invertebrates | species | 32595 | click here |
| babesia felis | Yes | species | eukaryota | invertebrates | species | 124135 | click here |
| babesia gibsoni | Yes | species | eukaryota | invertebrates | species | 33632 | click here |
| babesia lengau | Yes | species | eukaryota | invertebrates | species | 796395 | click here |
| babesia major | Yes | species | eukaryota | invertebrates | species | 127461 | click here |
| babesia microti | Yes | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia motasi | Yes | species | eukaryota | invertebrates | species | 237580 | click here |
| babesia occultans | Yes | species | eukaryota | invertebrates | species | 536930 | click here |
| babesia orientalis | Yes | species | eukaryota | invertebrates | species | 273649 | click here |
| babesia ovis | Yes | species | eukaryota | invertebrates | species | 5869 | click here |
| babesia perroncitoi | Yes | species | | | species | | click here |
| babesia sp. | Yes | species | eukaryota | invertebrates | species | 35084 | click here |
| babesia sp. bcs-2013b | Yes | no rank | | | species | 1298400 | click here |
| babesia sp. bcs-2013e | Yes | no rank | | | species | 1298403 | click here |
| babesia sp. pancevacki rit | Yes | no rank | eukaryota | invertebrates | species | 926050 | click here |
| babesia sp. 'venatorum' | Yes | no rank | eukaryota | invertebrates | species | 171411 | click here |
| babesia trautmanni | Yes | species | | invertebrates | species | | click here |
| babesia vogeli | Yes | species | | | species | | click here |
| babesia vulpes | Yes | species | | | species | 1842980 | click here |
| bacillus amyloliquefaciens | Yes | species | bacteria | bacteria | species | 1390 | click here |
| bacillus clausii | Yes | species | bacteria | bacteria | species | 79880 | click here |
| bacillus megaterium | Yes | species | bacteria | bacteria | species | 1404 | click here |
| bacillus plakortidis | Yes | species | bacteria | bacteria | species | 444060 | click here |
| bacillus sp. dr39 | Yes | no rank | bacteria | bacteria | species | 671943 | click here |
| bacillus sp. mk-t1 | Yes | no rank | | | species | 1078755 | click here |
| bacillus subtilis | Yes | species | bacteria | bacteria | species | 1423 | click here |
| bacterium mk-t4 | Yes | no rank | | | species | 1078620 | click here |
| bacterium mk-t5 | Yes | no rank | | | species | 1078621 | click here |
| bartonella bacilliformis | Yes | species | bacteria | bacteria | species | 774 | click here |
| bartonella bovis | Yes | species | bacteria | bacteria | species | 155194 | click here |
| bartonella chomelii | Yes | species | bacteria | bacteria | species | 236402 | click here |
| bartonella clarridgeiae | Yes | species | bacteria | bacteria | species | 56426 | click here |
| bartonella elizabethae | Yes | species | bacteria | bacteria | species | 807 | click here |
| bartonella grahamii | Yes | species | bacteria | bacteria | species | 33045 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| bartonella japonica | Yes | species | bacteria | bacteria | species | 357761 | click here |
| bartonella melophagi | Yes | species | bacteria | bacteria | species | 291176 | click here |
| bartonella phoceensis | Yes | species | bacteria | bacteria | species | 270249 | click here |
| bartonella queenslandensis | Yes | species | bacteria | bacteria | species | 481138 | click here |
| bartonella rattimassiliensis | Yes | species | bacteria | bacteria | species | 270250 | click here |
| bartonella rochalimae | Yes | species | bacteria | bacteria | species | 395923 | click here |
| bartonella sp. | Yes | species | bacteria | bacteria | species | 46358 | click here |
| bartonella sp. bm51yn | Yes | no rank | bacteria | bacteria | species | 261537 | click here |
| bartonella tamiae | Yes | species | bacteria | bacteria | species | 373638 | click here |
| bartonella tribocorum | Yes | species | bacteria | bacteria | species | 85701 | click here |
| bartonella vinsonii | Yes | species | bacteria | bacteria | species | 33047 | click here |
| bartonella vinsonii subsp. berkhoffii | Yes | subspecies | bacteria | bacteria | subspecies | 40933 | click here |
| bhanja virus | Yes | species | | | species | 1213620 | click here |
| bluetongue virus | Yes | species | viruses and viroids | viruses | species | 40051 | click here |
| bole tick virus 1 | Yes | species | | | species | 1608040 | click here |
| bole tick virus 3 | Yes | no rank | | | no rank | 1608042 | click here |
| bole tick virus 4 | Yes | species | | | species | 1746058 | click here |
| borrelia anserina | Yes | species | bacteria | bacteria | species | 143 | click here |
| borrelia coriaceae | Yes | species | bacteria | bacteria | species | 144 | click here |
| borrelia hermsii | Yes | species | bacteria | bacteria | species | 140 | click here |