| acanthamoeba genotype t4 | Yes | no rank | | invertebrates | species | 763037 | click here |
| acinetobacter schindleri | Yes | species | bacteria | bacteria | species | 108981 | click here |
| aedes aegypti | Yes | species | eukaryota | invertebrates | species | 7159 | click here |
| aedes albopictus | Yes | species | eukaryota | invertebrates | species | 7160 | click here |
| armillifer armillatus | Yes | species | eukaryota | invertebrates | species | 260804 | click here |
| ascaris suum | Yes | species | eukaryota | invertebrates | species | 6253 | click here |
| babesia sp. k-2015 | Yes | no rank | | | species | 1680131 | click here |
| babesia sp. tvy 11.016 | Yes | no rank | | | species | 1718803 | click here |
| babesia sp. tvy 12.047 | Yes | no rank | | | species | 1718804 | click here |
| babesia sp. tvy 14.010 | Yes | no rank | | | species | 1718805 | click here |
| babesia sp. tvy 14.019 | Yes | no rank | | | species | 1718806 | click here |
| babesia sp. tvy 14.022 | Yes | no rank | | | species | 1718807 | click here |
| babesia sp. tvy 9.003 | Yes | no rank | | | species | 1718808 | click here |
| bacillus cereus | Yes | species | bacteria | bacteria | species | 1396 | click here |
| bakau orthobunyavirus | Yes | species | viruses and viroids | viruses | species | 1933175 | click here |
| baylisascaris procyonis | Yes | species | eukaryota | invertebrates | species | 6259 | click here |
| bifidobacterium animalis subsp. lactis | Yes | subspecies | bacteria | bacteria | subspecies | 302911 | click here |
| bifidobacterium dentium | Yes | species | bacteria | bacteria | species | 1689 | click here |
| bifidobacterium eulemuris | Yes | species | | | species | 1765219 | click here |
| bifidobacterium lemurum | Yes | species | | | species | 1603886 | click here |
| bifidobacterium pseudocatenulatum | Yes | species | bacteria | bacteria | species | 28026 | click here |
| bifidobacterium sp. lmm_i9 | Yes | no rank | | | species | 1798154 | click here |
| black lemur adenovirus 1 | Yes | species | | | species | 2301493 | click here |
| black lemur adenovirus 2 | Yes | species | | | species | 2301494 | click here |
| black lemur adenovirus 3 | Yes | species | | | species | 2301495 | click here |
| black-and-white ruffed lemur adenovirus | Yes | species | | | species | 2301496 | click here |
| blastocystis hominis | Yes | species | eukaryota | plants | species | 12968 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| blastocystis sp. mj99-132 | Yes | no rank | eukaryota | plants | species | 227994 | click here |
| blastocystis sp. subtype 4 | Yes | no rank | eukaryota | plants | species | 944170 | click here |
| blastocystis sp. subtype 8 | Yes | no rank | eukaryota | plants | species | 429571 | click here |
| bordetella bronchiseptica | Yes | species | bacteria | bacteria | species | 518 | click here |
| borrelia sp. tvy 14.022 | Yes | no rank | | | species | 1719128 | click here |
| brown greater galago prosimian foamy virus | Yes | species | | | species | 2170139 | click here |
| brugia malayi | Yes | species | eukaryota | invertebrates | species | 6279 | click here |
| brugia pahangi | Yes | species | eukaryota | invertebrates | species | 6280 | click here |
| brugia patei | Yes | species | eukaryota | invertebrates | species | 42154 | click here |
| candidatus neoehrlichia sp. tvy 14.022 | Yes | no rank | | | species | 1718929 | click here |
| candidatus neoehrlichia sp. tvy 9.003 | Yes | no rank | | | species | 1718928 | click here |
| capillaria hepatica | Yes | species | | | species | 1239592 | click here |
| cardiovirus a | Yes | species | | | species | 1821749 | click here |
| cheirogaleid herpesvirus 1 | Yes | species | | | species | 1792586 | click here |
| cheirogaleid herpesvirus 2 | Yes | species | | | species | 1792587 | click here |
| chikungunya virus | Yes | species | viruses and viroids | viruses | species | 37124 | click here |
| clostridium ventriculi | Yes | species | bacteria | bacteria | species | 1267 | click here |
| crowned lemur adenovirus | Yes | species | | | species | 2301502 | click here |
| cryptosporidium sp. | Yes | species | eukaryota | invertebrates | species | 90962 | click here |
| eastern lesser bamboo lemur adenovirus | Yes | species | | | species | 2301503 | click here |
| echinococcus equinus | Yes | species | eukaryota | invertebrates | species | 519353 | click here |
| echinococcus granulosus | Yes | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus multilocularis | Yes | species | eukaryota | invertebrates | species | 6211 | click here |
| echinococcus oligarthrus | Yes | species | eukaryota | invertebrates | species | 6212 | click here |
| echinococcus ortleppi | Yes | species | eukaryota | invertebrates | species | 446560 | click here |
| echinococcus vogeli | Yes | species | eukaryota | invertebrates | species | 6213 | click here |
| encephalitozoon intestinalis | Yes | species | eukaryota | plants | species | 58839 | click here |
| encephalomyocarditis virus | Yes | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| entamoeba coli | Yes | species | eukaryota | invertebrates | species | 110766 | click here |
| entamoeba histolytica | Yes | species | eukaryota | invertebrates | species | 5759 | click here |
| entamoeba polecki | Yes | species | eukaryota | invertebrates | species | 110769 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| eretmapodites quinquevittatus | Yes | species | eukaryota | invertebrates | species | 503352 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| fasciola hepatica | Yes | species | eukaryota | invertebrates | species | 6192 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| gongylonema pulchrum | Yes | species | eukaryota | invertebrates | species | 637853 | click here |
| h1n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 114727 | click here |
| haemaphysalis lemuris | Yes | species | | | species | 1229386 | click here |
| haemaphysalis sp. 'microcebi' | Yes | no rank | | | species | 2282217 | click here |
| human endogenous retrovirus | Yes | species | viruses and viroids | viruses | species | 11827 | click here |
| human herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10298 | click here |
| hymenolepis diminuta | Yes | species | eukaryota | invertebrates | species | 6216 | click here |
| hymenolepis nana | Yes | species | eukaryota | invertebrates | species | 102285 | click here |
| hypotrichomonas mariae | Yes | species | | | species | 882543 | click here |
| indri pegivirus | Yes | species | | | species | 2490444 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| ixodes lemuris | Yes | species | | | species | 1229387 | click here |
| klebsiella pneumoniae | Yes | species | bacteria | bacteria | species | 573 | click here |
| lactobacillus agilis | Yes | species | bacteria | bacteria | species | 1601 | click here |
| lactococcus sp. dd01 | Yes | no rank | | | species | 1776443 | click here |
| laelapidae sp. cs-2018 | Yes | no rank | | | species | 2301595 | click here |
| leishmania donovani | Yes | species | eukaryota | invertebrates | species | 5661 | click here |
| leishmania major | Yes | species | eukaryota | invertebrates | species | 5664 | click here |
| lemur adenovirus | Yes | species | | | species | 2301506 | click here |
| lemur smacovirus | Yes | species | | | species | 1603069 | click here |
| lemuricola sp. 'eulemur 1' | Yes | no rank | | | species | 1008422 | click here |
| lemurpediculus verruculosus | Yes | species | eukaryota | invertebrates | species | 908929 | click here |
| lepilemur pegivirus | Yes | species | | | species | 2490445 | click here |
| leptospira interrogans serovar copenhageni | Yes | no rank | bacteria | bacteria | no rank | 44275 | click here |
| lesavirus 1 | Yes | species | | | species | 1603963 | click here |
| lesavirus 2 | Yes | species | | | species | 1603964 | click here |
| loris lydekkerianus | Yes | species | eukaryota | primates | species | 300163 | click here |
| lorisid herpesvirus 1 | Yes | species | | | species | 1792588 | click here |
| lymphocryptovirus 1 | Yes | | | viruses | no rank | 212718 | click here |
| macacine herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10325 | click here |
| murine coronavirus | Yes | species | viruses and viroids | viruses | species | 694005 | click here |
| mycobacterium avium | Yes | species | bacteria | bacteria | species | 1764 | click here |