| ascaridia galli | Yes | species | eukaryota | invertebrates | species | 46685 | click here |
| avian orthoavulavirus 1 | Yes | species | | | species | 2560319 | click here |
| campylobacter jejuni | Yes | species | bacteria | bacteria | species | 197 | click here |
| chlamydophila sp. peent | Yes | no rank | bacteria | bacteria | species | 96906 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| enterobacter cloacae | Yes | species | bacteria | bacteria | species | 550 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| fowl aviadenovirus 4 | Yes | no rank | viruses and viroids | viruses | no rank | 130663 | click here |
| fowlpox virus | Yes | species | viruses and viroids | viruses | species | 10261 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| influenza a virus (a/peacock/chakshahzad/narc9238/2007(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 558392 | click here |
| influenza a virus (a/peacock/egypt/07667s-nlqp/2007(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 647219 | click here |
| influenza a virus (a/peacock/yunnan/1/2015(h5n1)) | Yes | no rank | | | no rank | 1754052 | click here |
| influenza a virus (a/peacock/yunnan/3/2015(h5n1)) | Yes | no rank | | | no rank | 1754053 | click here |
| mycoplasma gallinaceum | Yes | species | bacteria | bacteria | species | 29556 | click here |
| mycoplasma gallisepticum | Yes | species | bacteria | bacteria | species | 2096 | click here |
| nymphalis io nucleopolyhedrovirus | Yes | species | viruses and viroids | viruses | species | 265022 | click here |
| ornithobacterium rhinotracheale | Yes | species | bacteria | bacteria | species | 28251 | click here |
| proteus mirabilis | Yes | species | bacteria | bacteria | species | 584 | click here |
| uncultured mycoplasma sp. | Yes | no rank | bacteria | environmental samples | species | 167967 | click here |