| acute bee paralysis virus | Yes | species | viruses and viroids | viruses | species | 92444 | click here |
| apis mellifera filamentous virus | Yes | species | | | species | 1100043 | click here |
| ascosphaera acerosa | Yes | species | eukaryota | plants | species | 51565 | click here |
| ascosphaera aggregata | Yes | species | eukaryota | plants | species | 51564 | click here |
| ascosphaera apis | Yes | species | eukaryota | plants | species | 5105 | click here |
| aspergillus niger | Yes | species | eukaryota | plants | species | 5061 | click here |
| black queen cell virus | Yes | species | viruses and viroids | viruses | species | 92395 | click here |
| chronic bee paralysis virus | Yes | species | viruses and viroids | viruses | species | 180822 | click here |
| crithidia bombi | Yes | species | eukaryota | invertebrates | species | 288676 | click here |
| deformed wing virus | Yes | species | viruses and viroids | viruses | species | 198112 | click here |
| euaspis polynesia | Yes | species | | | species | 1352276 | click here |
| israeli acute paralysis virus | Yes | species | | viruses | species | 294365 | click here |
| kashmir bee virus | Yes | species | viruses and viroids | viruses | species | 68876 | click here |
| lactobacillus micheneri | Yes | species | | | species | 1899430 | click here |
| pithoascus exsertus | Yes | species | eukaryota | plants | species | 129321 | click here |
| sacbrood virus | Yes | species | viruses and viroids | viruses | species | 89463 | click here |
| trichothecium ovalisporum | Yes | species | eukaryota | plants | species | 508457 | click here |
| trypanosomatidae sp. | Yes | species | | | species | 1737640 | click here |
| uncultured achromobacter sp. | Yes | no rank | bacteria | environmental samples | species | 182690 | click here |
| uncultured agrobacterium sp. | Yes | no rank | bacteria | environmental samples | species | 157277 | click here |
| uncultured alpha proteobacterium | No | no rank | bacteria | environmental samples | species | 91750 | click here |
| uncultured aquificae bacterium | No | no rank | bacteria | environmental samples | species | 453415 | click here |
| uncultured arthrobacter sp. | Yes | no rank | bacteria | environmental samples | species | 114050 | click here |
| uncultured bacillus sp. | Yes | no rank | bacteria | environmental samples | species | 83428 | click here |
| uncultured beta proteobacterium | No | no rank | bacteria | environmental samples | species | 86027 | click here |
| uncultured cupriavidus sp. | Yes | no rank | bacteria | environmental samples | species | 314008 | click here |
| uncultured delftia sp. | Yes | no rank | bacteria | environmental samples | species | 191464 | click here |
| uncultured erwinia sp. | Yes | no rank | bacteria | environmental samples | species | 246798 | click here |
| uncultured gamma proteobacterium | No | no rank | bacteria | environmental samples | species | 86473 | click here |
| uncultured janthinobacterium sp. | Yes | no rank | bacteria | environmental samples | species | 242828 | click here |
| uncultured propionibacterium sp. | Yes | no rank | bacteria | environmental samples | species | 218066 | click here |
| uncultured pseudomonas sp. | Yes | no rank | bacteria | environmental samples | species | 114707 | click here |
| uncultured sphingobacteriia bacterium | No | no rank | bacteria | environmental samples | species | 246143 | click here |
| uncultured wolbachia sp. | Yes | no rank | bacteria | environmental samples | species | 244204 | click here |
| vidia sp. ad452 | No | no rank | | | species | 1111383 | click here |