| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| babesia divergens | No | species | eukaryota | invertebrates | species | 32595 | click here |
| babesia motasi | No | species | eukaryota | invertebrates | species | 237580 | click here |
| babesia sp. 'venatorum' | No | no rank | eukaryota | invertebrates | species | 171411 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here |
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here |
| bovine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 10295 | click here |
| bovine viral diarrhea virus 1 | No | species | viruses and viroids | viruses | species | 11099 | click here |
| bovine viral diarrhea virus 1 | Yes | species | viruses and viroids | viruses | species | 11099 | click here |
| brucella abortus | No | species | bacteria | bacteria | species | 235 | click here |
| brucella melitensis | No | species | bacteria | bacteria | species | 29459 | click here |
| caprine arthritis encephalitis virus | No | species | viruses and viroids | viruses | species | 11660 | click here |
| caprine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 39944 | click here |
| caprine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 135102 | click here |
| cervid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 79891 | click here |
| chlamydia abortus | No | species | bacteria | bacteria | species | 83555 | click here |
| chlamydia abortus | Yes | species | bacteria | bacteria | species | 83555 | click here |
| chlamydia pecorum | No | species | bacteria | bacteria | species | 85991 | click here |
| chlamydia psittaci | No | species | bacteria | bacteria | species | 83554 | click here |
| chlamydia psittaci | Yes | species | bacteria | bacteria | species | 83554 | click here |
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here |
| coxiella burnetii | Yes | species | bacteria | bacteria | species | 777 | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. z10 | No | no rank | eukaryota | invertebrates | species | 448056 | click here |
| cystocaulus ocreatus | No | species | eukaryota | invertebrates | species | 473975 | click here |
| deltapapillomavirus sp. | No | species | | | species | 2729443 | click here |
| dichelobacter | No | | | bacteria | genus | 869 | click here |
| dichelobacter | Yes | | | bacteria | genus | 869 | click here |
| dichelobacter nodosus | No | species | bacteria | bacteria | species | 870 | click here |
| dichelobacter nodosus | Yes | species | bacteria | bacteria | species | 870 | click here |
| dicrocoelium dendriticum | No | species | eukaryota | invertebrates | species | 57078 | click here |
| dictyocaulus filaria | No | species | eukaryota | invertebrates | species | 44603 | click here |
| eimeria absheronae | No | species | | | species | | click here |
| eimeria alijevi | No | species | | | species | | click here |
| eimeria arloingi | No | species | | | species | 1317750 | click here |
| eimeria ibicis | No | species | | | species | | click here |
| eimeria kocharii | No | species | | | species | | click here |
| eimeria ninakohlyakimovae | No | species | | | species | 1871630 | click here |
| eimeria pallida | No | species | | | species | | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| haemonchus contortus | No | species | eukaryota | invertebrates | species | 6289 | click here |
| haemonchus contortus | Yes | species | eukaryota | invertebrates | species | 6289 | click here |
| influenza a virus | No | species | viruses and viroids | viruses | species | 11320 | click here |
| klebsiella pneumoniae | No | species | bacteria | bacteria | species | 573 | click here |
| leptospira interrogans | No | species | bacteria | bacteria | species | 173 | click here |
| mannheimia haemolytica | No | species | bacteria | bacteria | species | 75985 | click here |
| marshallagia marshalli | No | species | eukaryota | invertebrates | species | 106947 | click here |
| marshallagia marshalli | Yes | species | eukaryota | invertebrates | species | 106947 | click here |
| moraxella cuniculi | No | species | bacteria | bacteria | species | 34061 | click here |
| muellerius capillaris | No | species | eukaryota | invertebrates | species | 242453 | click here |
| mycobacterium avium | No | species | bacteria | bacteria | species | 1764 | click here |
| mycobacterium avium subsp. paratuberculosis | No | subspecies | bacteria | bacteria | subspecies | 1770 | click here |
| mycoplasma agalactiae | No | species | bacteria | bacteria | species | 2110 | click here |
| mycoplasma agalactiae 14628 | No | no rank | | | no rank | 1110504 | click here |
| mycoplasma arginini | No | species | bacteria | bacteria | species | 2094 | click here |
| mycoplasma auris 15026 | No | no rank | | | no rank | 1188233 | click here |
| mycoplasma capricolum | No | species | bacteria | bacteria | species | 2095 | click here |
| mycoplasma capricolum subsp. capripneumoniae | No | subspecies | bacteria | bacteria | subspecies | 40480 | click here |
| mycoplasma conjunctivae | No | species | bacteria | bacteria | species | 45361 | click here |
| mycoplasma conjunctivae | Yes | species | bacteria | bacteria | species | 45361 | click here |
| mycoplasma feriruminatoris | No | species | | | species | 1179777 | click here |
| mycoplasma mycoides | No | species | bacteria | bacteria | species | 2102 | click here |
| mycoplasma mycoides subsp. capri | No | subspecies | bacteria | bacteria | subspecies | 40477 | click here |
| mycoplasma mycoides subsp. mycoides | No | subspecies | bacteria | bacteria | subspecies | 2103 | click here |
| nematodirus davtiani | No | species | eukaryota | invertebrates | species | 94038 | click here |
| nematodirus rupicaprae | No | species | eukaryota | invertebrates | species | 94036 | click here |
| neocallimastix frontalis | No | species | eukaryota | plants | species | 4757 | click here |
| neospora caninum | No | species | eukaryota | invertebrates | species | 29176 | click here |
| neospora caninum | Yes | species | eukaryota | invertebrates | species | 29176 | click here |
| orf virus | No | species | viruses and viroids | viruses | species | 10258 | click here |
| ovine adenovirus d | No | species | viruses and viroids | viruses | species | 130327 | click here |
| ovine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 10398 | click here |
| parapoxvirus of red deer in new zealand | No | species | viruses and viroids | viruses | species | 129728 | click here |
| peste des petits ruminants virus | No | no rank | | | no rank | 2593991 | click here |
| peste-des-petits-ruminants virus | No | species | viruses and viroids | viruses | species | 31604 | click here |
| protostrongylus hobmaieri | No | species | | | species | 1418101 | click here |
| protostrongylus rufescens | No | species | eukaryota | invertebrates | species | 321386 | click here |
| salmonella enterica | No | species | bacteria | bacteria | species | 28901 | click here |
| sarcocystis oreamni | No | species | | | species | 1737910 | click here |
| sarcoptes scabiei | No | species | eukaryota | invertebrates | species | 52283 | click here |
| small ruminant lentivirus | No | no rank | viruses and viroids | viruses | no rank | 254355 | click here |
| spiculocaulus austriacus | No | species | | | species | | click here |
| spiculocaulus leuckarti | No | species | | | species | 1418103 | click here |
| spiculocaulus orloffi | No | species | | | species | | click here |
| staphylococcus aureus | No | species | bacteria | bacteria | species | 1280 | click here |
| streptococcus caprae | No | species | | | species | 1640501 | click here |
| streptococcus equi | No | species | bacteria | bacteria | species | 1336 | click here |
| taenia multiceps | No | species | eukaryota | invertebrates | species | 94034 | click here |
| teladorsagia circumcincta | No | species | eukaryota | invertebrates | species | 45464 | click here |
| teladorsagia circumcincta | Yes | species | eukaryota | invertebrates | species | 45464 | click here |
| theileria sp. | No | species | eukaryota | invertebrates | species | 27992 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichophyton mentagrophytes | No | species | eukaryota | plants | species | 523103 | click here |
| trichostrongylus axei | No | species | eukaryota | invertebrates | species | 40349 | click here |
| yersinia enterocolitica | No | species | bacteria | bacteria | species | 630 | click here |