| adenovirus red squirrel/deu/jk-2011 | No | no rank | viruses and viroids | viruses | species | 981209 | click here |
| adenovirus squirrel/96-29/kor | No | no rank | | | species | 1715675 | click here |
| ascaris suum | No | species | eukaryota | invertebrates | species | 6253 | click here |
| babesia microti | No | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia microti | Yes | species | eukaryota | invertebrates | species | 5868 | click here |
| bartonella grahamii | No | species | bacteria | bacteria | species | 33045 | click here |
| bartonella sp. sc12uk | No | no rank | bacteria | bacteria | species | 191972 | click here |
| bartonella sp. sv12uk | No | no rank | bacteria | bacteria | species | 191974 | click here |
| bartonella washoensis | No | species | bacteria | bacteria | species | 186739 | click here |
| bartonella washoensis | Yes | species | bacteria | bacteria | species | 186739 | click here |
| blastocystis sp. subtype 4 | No | no rank | eukaryota | plants | species | 944170 | click here |
| borreliella afzelii | No | species | bacteria | bacteria | species | 29518 | click here |
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here |
| borreliella garinii | No | species | bacteria | bacteria | species | 29519 | click here |
| candidatus bartonella rudakovii | No | subspecies | bacteria | bacteria | species | 471229 | click here |
| cardiovirus a | No | species | | | species | 1821749 | click here |
| catenotaenia dendritica | No | species | eukaryota | invertebrates | species | 913837 | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. chipmunk genotype i | No | no rank | | | species | 1280935 | click here |
| cryptosporidium sp. ferret genotype | No | no rank | eukaryota | invertebrates | species | 574837 | click here |
| cryptosporidium sp. sv30 | No | no rank | eukaryota | invertebrates | species | 485422 | click here |
| cryptosporidium sp. sv33 | No | no rank | eukaryota | invertebrates | species | 485421 | click here |
| dermacentor marginatus | No | species | eukaryota | invertebrates | species | 49202 | click here |
| eimeria mira | No | species | | | species | 1870968 | click here |
| eimeria sciurorum | No | species | | | species | 1770256 | click here |
| encephalomyocarditis virus | No | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| francisella tularensis subsp. holarctica | No | subspecies | bacteria | bacteria | subspecies | 119857 | click here |
| gulyaevia longivaginata | No | species | eukaryota | invertebrates | species | 1577180 | click here |
| hepatozoon sp. | No | species | | | species | 1484059 | click here |
| hepatozoon sp. squirrel 1 | No | no rank | eukaryota | invertebrates | species | 441545 | click here |
| ixodes ricinus | No | species | eukaryota | invertebrates | species | 34613 | click here |
| leishmania panamensis | No | species | eukaryota | invertebrates | species | 5679 | click here |
| ljungan virus | No | species | viruses and viroids | viruses | species | 172314 | click here |
| lymphocytic choriomeningitis mammarenavirus | No | species | viruses and viroids | viruses | species | 11623 | click here |
| monkeypox virus | No | species | viruses and viroids | viruses | species | 10244 | click here |
| paramyxovirus a69-1 | No | species | | | species | 1481710 | click here |
| paramyxovirus a69-2 | No | species | | | species | 1481711 | click here |
| red squirrel adenovirus 1 | No | isolate | | | isolate | 2773314 | click here |
| red squirrel rotavirus xt854/06 | No | no rank | viruses and viroids | viruses | species | 703409 | click here |
| rotavirus a red squirrel/r85/2007/gbr | No | no rank | viruses and viroids | viruses | no rank | 693632 | click here |
| sciurus vulgaris betaherpesvirus 1 | No | species | | | species | 2721742 | click here |
| squirrel adenovirus 1 | No | no rank | | | no rank | 1968887 | click here |
| squirrelpox virus | No | species | viruses and viroids | viruses | species | 240426 | click here |
| squirrelpox virus berlin_2015 | No | species | | | species | 2029293 | click here |
| staphylococcus aureus | No | species | bacteria | bacteria | species | 1280 | click here |
| strongyloides robustus | No | species | eukaryota | invertebrates | species | 402040 | click here |
| taenia martis | No | species | eukaryota | invertebrates | species | 159981 | click here |
| tahyna orthobunyavirus | No | species | | | species | 2560796 | click here |
| tahyna virus | No | no rank | viruses and viroids | viruses | no rank | 45270 | click here |
| tick-borne encephalitis virus | No | species | viruses and viroids | viruses | species | 11084 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| trypanoxyuris sciuri | No | species | eukaryota | invertebrates | species | 694255 | click here |
| uncultured bacterium | No | no rank | bacteria | environmental samples | species | 77133 | click here |
| uncultured borrelia sp. | No | no rank | bacteria | environmental samples | species | 198435 | click here |