| aelurostrongylus abstrusus | Yes | species | eukaryota | invertebrates | species | 321389 | click here |
| alaria marcianae | Yes | species | | | species | 1684801 | click here |
| alphacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 693997 | click here |
| amblyomma dubitatum | Yes | species | eukaryota | invertebrates | species | 321419 | click here |
| amblyomma longirostre | Yes | species | eukaryota | invertebrates | species | 251386 | click here |
| ancylostoma tubaeforme | Yes | species | eukaryota | invertebrates | species | 53327 | click here |
| anopheles coluzzii | Yes | species | | | species | 1518534 | click here |
| anopheles gambiae | Yes | species | eukaryota | invertebrates | species | 7165 | click here |
| babesia canis | Yes | species | eukaryota | invertebrates | species | 5867 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| bovine spongiform encephalopathy agent | Yes | species | | | species | | click here |
| brucella abortus | Yes | species | bacteria | bacteria | species | 235 | click here |
| candidatus mycoplasma haemominutum | Yes | species | bacteria | bacteria | species | 209446 | click here |
| candidatus mycoplasma turicensis | Yes | species | bacteria | bacteria | species | 346879 | click here |
| canine distemper virus | Yes | species | viruses and viroids | viruses | species | 11232 | click here |
| canine parvovirus | Yes | no rank | viruses and viroids | viruses | no rank | 10788 | click here |
| capillaria aerophila | Yes | species | | | species | 1172388 | click here |
| carnivore protoparvovirus 1 | Yes | species | | | species | 1511906 | click here |
| clostridioides difficile | Yes | species | bacteria | bacteria | species | 1496 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| coccidioides immitis | Yes | species | eukaryota | plants | species | 5501 | click here |
| cytauxzoon felis | Yes | species | eukaryota | invertebrates | species | 27996 | click here |
| cytauxzoon sp. | Yes | species | | | species | 1937407 | click here |
| cytauxzoon sp. mra-2009-4 | Yes | no rank | eukaryota | invertebrates | species | 642078 | click here |
| cytauxzoon sp. mra-2009-5 | Yes | no rank | eukaryota | invertebrates | species | 642079 | click here |
| cytauxzoon sp. mra-2009-6 | Yes | no rank | eukaryota | invertebrates | species | 642080 | click here |
| cytauxzoon sp. mra-2009-7 | Yes | no rank | eukaryota | invertebrates | species | 642081 | click here |
| cytauxzoon sp. mra-2009-8 | Yes | no rank | eukaryota | invertebrates | species | 642082 | click here |
| dirofilaria immitis | Yes | species | eukaryota | invertebrates | species | 6287 | click here |
| echinococcus granulosus | Yes | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus oligarthrus | Yes | species | eukaryota | invertebrates | species | 6212 | click here |
| echinococcus vogeli | Yes | species | eukaryota | invertebrates | species | 6213 | click here |
| ehrlichia canis | Yes | species | bacteria | bacteria | species | 944 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| felid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10334 | click here |
| feline calicivirus | Yes | species | viruses and viroids | viruses | species | 11978 | click here |
| feline coronavirus | Yes | no rank | viruses and viroids | viruses | no rank | 12663 | click here |
| feline immunodeficiency virus | Yes | species | viruses and viroids | viruses | species | 11673 | click here |
| feline leukemia virus | Yes | species | viruses and viroids | viruses | species | 11768 | click here |
| feline morbillivirus | Yes | species | | | species | 1170234 | click here |
| feline panleukopenia virus | Yes | no rank | viruses and viroids | viruses | no rank | 10786 | click here |
| feline parvovirus | Yes | species | viruses and viroids | viruses | species | 10785 | click here |
| helicobacter heilmannii | Yes | species | bacteria | bacteria | species | 35817 | click here |
| hepatozoon felis | Yes | species | eukaryota | invertebrates | species | 294745 | click here |
| hepatozoon sp. | Yes | species | | | species | 1484059 | click here |
| hepatozoon sp. mra-2009-1 | Yes | no rank | eukaryota | invertebrates | species | 642084 | click here |
| hepatozoon sp. mra-2009-2 | Yes | no rank | eukaryota | invertebrates | species | 642085 | click here |
| hepatozoon sp. mra-2009-3 | Yes | no rank | eukaryota | invertebrates | species | 642086 | click here |
| histoplasma capsulatum | Yes | species | eukaryota | plants | species | 5037 | click here |
| human picobirnavirus | Yes | species | viruses and viroids | viruses | species | 145856 | click here |
| leopardus pardalis gammaherpesvirus 1 | Yes | species | | | species | 1706830 | click here |
| leopardus wiedii papillomavirus type 1 | Yes | species | | | species | 2495531 | click here |
| leptospira interrogans | Yes | species | bacteria | bacteria | species | 173 | click here |
| lion lentivirus | Yes | no rank | viruses and viroids | viruses | no rank | 289357 | click here |
| malassezia pachydermatis | Yes | species | eukaryota | plants | species | 77020 | click here |
| malassezia sympodialis | Yes | species | eukaryota | plants | species | 76777 | click here |
| mesocestoides lineatus | Yes | species | eukaryota | invertebrates | species | 160008 | click here |
| metathelazia felis | Yes | species | | | species | | click here |
| mycobacterium leprae | Yes | species | bacteria | bacteria | species | 1769 | click here |
| mycoplasma haemofelis | Yes | species | bacteria | bacteria | species | 29501 | click here |
| oncicola venezuelensis | Yes | species | | | species | 1932782 | click here |
| paracoccidioides brasiliensis | Yes | species | eukaryota | plants | species | 121759 | click here |
| picobirnavirus geoffroys_cat/uru-01/2009 | Yes | no rank | | | species | 1068740 | click here |
| puma lentivirus | Yes | species | viruses and viroids | viruses | species | 12804 | click here |
| rabies virus | Yes | species | viruses and viroids | viruses | species | 11292 | click here |
| rickettsia amblyommatis | Yes | species | bacteria | bacteria | species | 33989 | click here |
| sarcocystis cf. felis wacf-2013 | Yes | no rank | | | species | 1334824 | click here |
| sarcocystis felis | Yes | species | eukaryota | invertebrates | species | 223365 | click here |
| sparganum proliferum | Yes | species | eukaryota | invertebrates | species | 64606 | click here |
| spirometra sp. ssp1 | Yes | no rank | | | species | 1447039 | click here |
| spirometra sp. ssp2 | Yes | no rank | | | species | 1447040 | click here |
| taenia ovis | Yes | species | eukaryota | invertebrates | species | 6203 | click here |
| torque teno ocelot virus | Yes | species | | | species | 2579707 | click here |
| toxascaris leonina | Yes | species | eukaryota | invertebrates | species | 59264 | click here |
| toxocara cati | Yes | species | eukaryota | invertebrates | species | 6266 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichinella murrelli | Yes | species | eukaryota | invertebrates | species | 144512 | click here |
| trypanosoma cruzi | Yes | species | eukaryota | invertebrates | species | 5693 | click here |
| trypanosoma evansi | Yes | species | eukaryota | invertebrates | species | 5697 | click here |
| uncultured anaplasma sp. | Yes | no rank | bacteria | environmental samples | species | 319051 | click here |
| uncultured ehrlichia sp. | Yes | no rank | bacteria | environmental samples | species | 249170 | click here |