| anaplasma bovis | Yes | species | bacteria | bacteria | species | 186733 | click here |
| anaplasma marginale | Yes | species | bacteria | bacteria | species | 770 | click here |
| anaplasma sp. 1(2011) | Yes | no rank | | | species | 1049593 | click here |
| anaplasma sp. 2(2011) | Yes | no rank | | | species | 1049594 | click here |
| anaplasma sp. 3(2011) | Yes | no rank | | | species | 1049595 | click here |
| anaplasma sp. 4(2011) | Yes | no rank | | | species | 1049596 | click here |
| anaplasma sp. 5(2011) | Yes | no rank | | | species | 1049597 | click here |
| babesia bigemina | Yes | species | eukaryota | invertebrates | species | 5866 | click here |
| babesia bovis | Yes | species | eukaryota | invertebrates | species | 5865 | click here |
| bluetongue virus | Yes | species | viruses and viroids | viruses | species | 40051 | click here |
| bluetongue virus 14 | Yes | no rank | viruses and viroids | viruses | no rank | 248912 | click here |
| bluetongue virus 18 | Yes | no rank | viruses and viroids | viruses | no rank | 197781 | click here |
| bluetongue virus 3 | Yes | no rank | viruses and viroids | viruses | no rank | 36423 | click here |
| bovine respiratory syncytial virus | Yes | species | viruses and viroids | viruses | species | 11246 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. deer genotype | Yes | no rank | | | species | 1529606 | click here |
| ehrlichia chaffeensis | No | species | bacteria | bacteria | species | 945 | click here |
| ehrlichia chaffeensis | Yes | species | bacteria | bacteria | species | 945 | click here |
| epizootic hemorrhagic disease virus | Yes | species | viruses and viroids | viruses | species | 40054 | click here |
| epizootic hemorrhagic disease virus 2 | Yes | no rank | viruses and viroids | viruses | no rank | 33721 | click here |
| leishmania sp. | Yes | species | eukaryota | invertebrates | species | 28847 | click here |
| leptospira interrogans | Yes | species | bacteria | bacteria | species | 173 | click here |
| mycobacterium leprae | Yes | species | bacteria | bacteria | species | 1769 | click here |
| mycoplasma ovis | Yes | species | bacteria | bacteria | species | 171632 | click here |
| neospora caninum | Yes | species | eukaryota | invertebrates | species | 29176 | click here |
| phaeosphaeria sp. | Yes | species | | | species | 1715242 | click here |
| taenia hydatigena | Yes | species | eukaryota | invertebrates | species | 85431 | click here |
| taenia omissa | Yes | species | | | species | 1256673 | click here |
| theileria cervi | Yes | species | eukaryota | invertebrates | species | 72148 | click here |
| theileria sp. mgi11 | Yes | no rank | eukaryota | invertebrates | species | 882461 | click here |
| theileria sp. mgi9 | Yes | no rank | eukaryota | invertebrates | species | 882462 | click here |
| toxascaris leonina | Yes | species | eukaryota | invertebrates | species | 59264 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| uncultured anaplasma sp. | Yes | no rank | bacteria | environmental samples | species | 319051 | click here |
| uncultured mycoplasma sp. | Yes | no rank | bacteria | environmental samples | species | 167967 | click here |
| uncultured theileria sp. | Yes | no rank | | | species | 1177740 | click here |