| achromobacter sp. | Yes | species | bacteria | bacteria | species | 134375 | click here |
| acinetobacter junii | Yes | species | bacteria | bacteria | species | 40215 | click here |
| acute bee paralysis virus | Yes | species | viruses and viroids | viruses | species | 92444 | click here |
| aeromonas hydrophila | Yes | species | bacteria | bacteria | species | 644 | click here |
| alternaria sp. | Yes | species | | | species | 1715220 | click here |
| apis mellifera filamentous virus | Yes | species | | | species | 1100043 | click here |
| apis rhabdovirus 1 | Yes | species | | | species | 1983567 | click here |
| ascosphaera apis | Yes | species | eukaryota | plants | species | 5105 | click here |
| aspergillus nidulans | Yes | species | eukaryota | plants | species | 162425 | click here |
| aspergillus sp. | Yes | no rank | eukaryota | plants | species | 5065 | click here |
| aureobasidium pullulans | Yes | species | eukaryota | plants | species | 5580 | click here |
| bacillus cereus | Yes | species | bacteria | bacteria | species | 1396 | click here |
| bacillus sp. | Yes | species | bacteria | bacteria | species | 1409 | click here |
| bacillus subtilis | Yes | species | bacteria | bacteria | species | 1423 | click here |
| bacillus thuringiensis | Yes | species | bacteria | bacteria | species | 1428 | click here |
| bacterium | Yes | no rank | | | species | 1869227 | click here |
| bartonella apis | Yes | species | | | species | 1686310 | click here |
| bartonella elizabethae | Yes | species | bacteria | bacteria | species | 807 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| bartonella rochalimae | Yes | species | bacteria | bacteria | species | 395923 | click here |
| bartonella sp. ad273 | Yes | no rank | bacteria | bacteria | species | 336950 | click here |
| bartonella sp. ea 1g6 | Yes | no rank | bacteria | bacteria | species | 391572 | click here |
| bartonella tribocorum | Yes | species | bacteria | bacteria | species | 85701 | click here |
| beauveria bassiana | Yes | species | eukaryota | plants | species | 176275 | click here |
| beauveria pseudobassiana | Yes | species | eukaryota | plants | species | 931006 | click here |
| beauveria sp. | Yes | species | | | species | 1891652 | click here |
| beauveria varroae | Yes | species | | | species | 1069079 | click here |
| bee macula-like virus | Yes | species | | | species | 1682186 | click here |
| bifidobacterium asteroides | Yes | species | bacteria | bacteria | species | 1684 | click here |
| bjerkandera adusta | Yes | species | eukaryota | plants | species | 5331 | click here |
| black queen cell virus | Yes | species | viruses and viroids | viruses | species | 92395 | click here |
| borrelia anserina | Yes | species | bacteria | bacteria | species | 143 | click here |
| borreliella afzelii | Yes | species | bacteria | bacteria | species | 29518 | click here |
| brachybacterium sp. | Yes | species | | | species | 1891286 | click here |
| burkholderia sp. vd14 | Yes | no rank | | | species | 1715472 | click here |
| cardinium endosymbiont of dermanyssus gallinae | Yes | species | | | species | 1241771 | click here |
| chaetomium globosum | Yes | species | eukaryota | plants | species | 38033 | click here |
| chaetomium sp. | Yes | species | | | species | 1769349 | click here |
| chlamydia psittaci | Yes | species | bacteria | bacteria | species | 83554 | click here |
| chronic bee paralysis virus | Yes | species | viruses and viroids | viruses | species | 180822 | click here |
| cladosporium ramotenellum | Yes | species | eukaryota | plants | species | 470174 | click here |
| cladosporium sp. | Yes | species | | | species | 1707700 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| corynebacterium sp. | Yes | no rank | bacteria | bacteria | species | 1720 | click here |
| coxiella burnetii | Yes | species | bacteria | bacteria | species | 777 | click here |
| curtobacterium pusillum | Yes | species | bacteria | bacteria | species | 69373 | click here |
| deformed wing virus | Yes | species | viruses and viroids | viruses | species | 198112 | click here |
| dermacoccus nishinomiyaensis | Yes | species | bacteria | bacteria | species | 1274 | click here |
| eastern equine encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11021 | click here |
| enterobacter cloacae | Yes | species | bacteria | bacteria | species | 550 | click here |
| enterobacter hormaechei | Yes | species | bacteria | bacteria | species | 158836 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| enterococcus gallinarum | Yes | species | bacteria | bacteria | species | 1353 | click here |
| enterococcus sp. | Yes | species | bacteria | bacteria | species | 35783 | click here |
| equine encephalosis virus | Yes | species | viruses and viroids | viruses | species | 201490 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| finegoldia magna | Yes | species | bacteria | bacteria | species | 1260 | click here |
| francisella tularensis | Yes | species | bacteria | bacteria | species | 263 | click here |
| fusarium lateritium | Yes | species | eukaryota | plants | species | 5523 | click here |
| israeli acute paralysis virus | Yes | species | | viruses | species | 294365 | click here |
| japanese encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11072 | click here |
| kama virus | Yes | species | | | species | 1456752 | click here |
| kashmir bee virus | Yes | species | viruses and viroids | viruses | species | 68876 | click here |
| kocuria sp. | Yes | species | | | species | 1871328 | click here |
| lake sinai virus 4 | Yes | species | viruses and viroids | viruses | species | 1345095 | click here |
| langat virus | Yes | species | viruses and viroids | viruses | species | 11085 | click here |
| leishmania major | Yes | species | eukaryota | invertebrates | species | 5664 | click here |
| litomosoides carinii | Yes | species | eukaryota | invertebrates | species | 6299 | click here |
| litomosoides sigmodontis | Yes | species | eukaryota | invertebrates | species | 42156 | click here |
| litomosoides yutajensis | Yes | species | eukaryota | invertebrates | species | 221928 | click here |
| lonsdalea sp. | Yes | species | | | species | 1898980 | click here |
| lysinibacillus sp. | Yes | species | | | species | 1869345 | click here |
| metarhizium anisopliae | Yes | species | eukaryota | plants | species | 5530 | click here |
| metarhizium sp. | Yes | species | | | species | 1884861 | click here |
| microbacterium sp. | Yes | no rank | bacteria | bacteria | species | 51671 | click here |
| micrococcus luteus | Yes | species | bacteria | bacteria | species | 1270 | click here |
| micrococcus yunnanensis | Yes | species | bacteria | bacteria | species | 566027 | click here |
| ochrobactrum ciceri | Yes | species | bacteria | bacteria | species | 391287 | click here |
| omsk hemorrhagic fever virus | Yes | species | viruses and viroids | viruses | species | 12542 | click here |
| orientia tsutsugamushi | Yes | species | bacteria | bacteria | species | 784 | click here |
| paenibacillus wynnii | Yes | species | bacteria | bacteria | species | 268407 | click here |
| pantoea agglomerans | Yes | species | bacteria | bacteria | species | 549 | click here |
| pantoea vagans | Yes | species | bacteria | bacteria | species | 470934 | click here |
| paraburkholderia ginsengisoli | Yes | species | bacteria | bacteria | species | 311231 | click here |
| paraburkholderia zhejiangensis | Yes | no rank | bacteria | bacteria | species | 871203 | click here |
| partitiviridae sp. | Yes | species | | | species | 1955170 | click here |
| penicillium brevicompactum | Yes | species | eukaryota | plants | species | 5074 | click here |
| penicillium buchwaldii | Yes | species | | | species | 1263195 | click here |
| penicillium citreonigrum | Yes | species | eukaryota | plants | species | 69768 | click here |
| penicillium corylophilum | Yes | species | eukaryota | plants | species | 70792 | click here |
| penicillium crustosum | Yes | species | eukaryota | plants | species | 36656 | click here |
| penicillium echinulatum | Yes | species | eukaryota | plants | species | 60174 | click here |
| penicillium sp. | Yes | species | eukaryota | plants | species | 5081 | click here |
| plasmodium sp. | Yes | species | eukaryota | invertebrates | species | 31272 | click here |
| propionibacterium sp. feline oral taxon 326 | Yes | no rank | | | species | 1577386 | click here |
| proteus mirabilis | Yes | species | bacteria | bacteria | species | 584 | click here |
| providencia sp. | Yes | no rank | bacteria | bacteria | species | 589 | click here |
| providencia vermicola | Yes | species | bacteria | bacteria | species | 333965 | click here |
| pseudomonas aeruginosa | Yes | species | bacteria | bacteria | species | 287 | click here |
| pseudomonas sp. | Yes | species | bacteria | bacteria | species | 306 | click here |