| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| ascaris suum | No | species | eukaryota | invertebrates | species | 6253 | click here |
| bartonella durdenii | No | species | bacteria | bacteria | species | 488621 | click here |
| bartonella sp. sv06uk | No | no rank | bacteria | bacteria | species | 191973 | click here |
| borreliella afzelii | No | species | bacteria | bacteria | species | 29518 | click here |
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here |
| borreliella garinii | No | species | bacteria | bacteria | species | 29519 | click here |
| california encephalitis virus | No | no rank | viruses and viroids | viruses | no rank | 35305 | click here |
| cardiovirus a | No | species | | | species | 1821749 | click here |
| colorado tick fever virus | No | species | viruses and viroids | viruses | species | 46839 | click here |
| cryptosporidium muris | No | species | eukaryota | invertebrates | species | 5808 | click here |
| cryptosporidium sp. | No | species | eukaryota | invertebrates | species | 90962 | click here |
| cryptosporidium sp. chipmunk genotype i | No | no rank | | | species | 1280935 | click here |
| cryptosporidium sp. deer mouse genotype iii | No | no rank | | | species | 1759700 | click here |
| cryptosporidium sp. skunk genotype | No | no rank | eukaryota | invertebrates | species | 564991 | click here |
| cryptosporidium ubiquitum | No | species | eukaryota | invertebrates | species | 857276 | click here |
| culex pipiens | No | species | eukaryota | invertebrates | species | 7175 | click here |
| eastern equine encephalitis virus | No | species | viruses and viroids | viruses | species | 11021 | click here |
| eimeria lancasterensis | No | species | eukaryota | invertebrates | species | 485697 | click here |
| eimeria sp. esp-181 | No | no rank | eukaryota | invertebrates | species | 547560 | click here |
| gongylonema pulchrum | No | species | eukaryota | invertebrates | species | 637853 | click here |
| hepatozoon griseisciuri | No | species | | | species | | click here |
| hepatozoon sp. ex sciurus carolinensis kea-2011 | No | no rank | | | species | 1080286 | click here |
| hoplopleura sciuricola | No | species | eukaryota | invertebrates | species | 160142 | click here |
| human echovirus | No | species | | | species | 1569923 | click here |
| hymenolepis diminuta | No | species | eukaryota | invertebrates | species | 6216 | click here |
| hymenolepis folkertsi | No | species | | | species | 1903430 | click here |
| jamestown canyon virus | No | no rank | viruses and viroids | viruses | no rank | 35511 | click here |
| keystone orthobunyavirus | No | species | | | species | 2560538 | click here |
| keystone virus | No | no rank | viruses and viroids | viruses | no rank | 35514 | click here |
| la crosse orthobunyavirus | No | species | | | species | 2560547 | click here |
| la crosse virus | No | no rank | viruses and viroids | viruses | no rank | 11577 | click here |
| leptospira interrogans | No | species | bacteria | bacteria | species | 173 | click here |
| lymphocytic choriomeningitis mammarenavirus | No | species | viruses and viroids | viruses | species | 11623 | click here |
| mammalian orthoreovirus 3 | No | no rank | viruses and viroids | viruses | no rank | 538123 | click here |
| minute virus of mice | No | species | viruses and viroids | viruses | species | 10794 | click here |
| murid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10366 | click here |
| murine adenovirus 1 | No | no rank | viruses and viroids | viruses | no rank | 10530 | click here |
| murine mastadenovirus a | No | species | viruses and viroids | viruses | species | 129956 | click here |
| murine pneumonia virus | No | species | viruses and viroids | viruses | species | 11263 | click here |
| neohaematopinus sciuri | No | species | eukaryota | invertebrates | species | 160166 | click here |
| notoedres douglasi | No | species | | | species | | click here |
| ochlerotatus abserratus | No | species | eukaryota | invertebrates | species | 329100 | click here |
| ochlerotatus atlanticus | No | species | | | species | 1205936 | click here |
| ochlerotatus intrudens | No | species | eukaryota | invertebrates | species | 228921 | click here |
| ochlerotatus stimulans | No | species | eukaryota | invertebrates | species | 228919 | click here |
| ochlerotatus triseriatus | No | species | eukaryota | invertebrates | species | 7162 | click here |
| paramyxovirus c40 | No | species | | | species | 1481709 | click here |
| powassan virus | No | species | viruses and viroids | viruses | species | 11083 | click here |
| rabies virus | No | species | viruses and viroids | viruses | species | 11292 | click here |
| salmonella enterica | No | species | bacteria | bacteria | species | 28901 | click here |
| salmonella enterica subsp. enterica serovar kentucky | No | no rank | bacteria | bacteria | no rank | 192955 | click here |
| salmonella enterica subsp. enterica serovar oranienburg | No | no rank | bacteria | bacteria | no rank | 28147 | click here |
| sciurus carolinensis betaherpesvirus 1 | No | species | | | species | 2721741 | click here |
| sciurus carolinensis gammaherpesvirus 1 | No | species | | | species | 2721745 | click here |
| sciurus carolinensis polyomavirus 1 | No | species | | | species | 2721750 | click here |
| sendai virus | No | species | viruses and viroids | viruses | species | 11191 | click here |
| snowshoe hare virus | No | no rank | viruses and viroids | viruses | no rank | 11580 | click here |
| squirrel fibroma virus | No | species | viruses and viroids | viruses | species | 538970 | click here |
| squirrelpox virus | No | species | viruses and viroids | viruses | species | 240426 | click here |
| st. louis encephalitis virus | No | species | viruses and viroids | viruses | species | 11080 | click here |
| staphylococcus sciuri | No | species | bacteria | bacteria | species | 1296 | click here |
| staphylococcus sciuri subsp. sciuri | No | subspecies | bacteria | bacteria | subspecies | 147467 | click here |
| strongyloides robustus | No | species | eukaryota | invertebrates | species | 402040 | click here |
| theilovirus | No | no rank | viruses and viroids | viruses | no rank | 204711 | click here |
| tick-borne encephalitis virus | No | species | viruses and viroids | viruses | species | 11084 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| trypanoxyuris sciuri | No | species | eukaryota | invertebrates | species | 694255 | click here |
| usutu virus | No | species | viruses and viroids | viruses | species | 64286 | click here |
| vesicular stomatitis new jersey virus | No | species | viruses and viroids | viruses | species | 11280 | click here |
| west nile virus | No | species | viruses and viroids | viruses | species | 11082 | click here |