| aedes japonicus | No | species | eukaryota | invertebrates | species | 140438 | click here | 
| aedes japonicus japonicus | No | subspecies | eukaryota | invertebrates | subspecies | 140439 | click here | 
| alcelaphine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 35252 | click here | 
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here | 
| anaplasma sp. 1-ap-2016 | No | no rank |   |   | species | 1811197 | click here | 
| ashworthius sidemi | No | species | eukaryota | invertebrates | species | 126389 | click here | 
| babesia bigemina | No | species | eukaryota | invertebrates | species | 5866 | click here | 
| babesia capreoli | No | species | eukaryota | invertebrates | species | 308426 | click here | 
| babesia cf. odocoilei | No | no rank |   |   | species | 1078082 | click here | 
| babesia divergens | No | species | eukaryota | invertebrates | species | 32595 | click here | 
| babesia duncani | No | species | eukaryota | invertebrates | species | 323732 | click here | 
| babesia sp. | No | species | eukaryota | invertebrates | species | 35084 | click here | 
| babesia sp. 899-8 | No | no rank | eukaryota | invertebrates | species | 940460 | click here | 
| babesia sp. fd1 | No | no rank | eukaryota | invertebrates | species | 323729 | click here | 
| babesia sp. 'venatorum' | No | no rank | eukaryota | invertebrates | species | 171411 | click here | 
| bacillus subtilis | No | species | bacteria | bacteria | species | 1423 | click here | 
| batai virus | No | no rank | viruses and viroids | viruses | no rank | 80942 | click here | 
| blastocystis sp. subtype 10 | No | no rank | eukaryota | plants | species | 944207 | click here | 
| blastocystis sp. subtype 5 | No | no rank | eukaryota | plants | species | 944169 | click here | 
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here | 
| border disease virus | No | species | viruses and viroids | viruses | species | 358764 | click here | 
| borreliella afzelii | No | species | bacteria | bacteria | species | 29518 | click here | 
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here | 
| bovine ephemeral fever virus | No | species | viruses and viroids | viruses | species | 11303 | click here | 
| bovine foamy virus | No | species | viruses and viroids | viruses | species | 207343 | click here | 
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here | 
| bovine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 10295 | click here | 
| bovine herpesvirus 4 | No | species | viruses and viroids | viruses | species | 10385 | click here | 
| bovine mastadenovirus a | No | species | viruses and viroids | viruses | species | 129953 | click here | 
| bovine respiratory syncytial virus | No | species | viruses and viroids | viruses | species | 11246 | click here | 
| bovine viral diarrhea virus 1 | No | species | viruses and viroids | viruses | species | 11099 | click here | 
| bunostomum trigonocephalum | No | species | eukaryota | invertebrates | species | 66065 | click here | 
| bunyamwera orthobunyavirus | No | species |   |   | species | 1933179 | click here | 
| bunyamwera virus | No | species | viruses and viroids | viruses | species | 35304 | click here | 
| calicophoron daubneyi | No | species | eukaryota | invertebrates | species | 300641 | click here | 
| california encephalitis orthobunyavirus | No | species |   |   | species | 1933264 | click here | 
| california encephalitis virus | No | no rank | viruses and viroids | viruses | no rank | 35305 | click here | 
| calovo virus | No | species | viruses and viroids | viruses | species | 365047 | click here | 
| caprine arthritis encephalitis virus | No | species | viruses and viroids | viruses | species | 11660 | click here | 
| caprine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 39944 | click here | 
| cervid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 79891 | click here | 
| chabertia ovina | No | species | eukaryota | invertebrates | species | 63233 | click here | 
| chlamydia abortus | No | species | bacteria | bacteria | species | 83555 | click here | 
| chronic wasting disease | No | species |   |   |   |   | click here | 
| citrobacter murliniae | No | species | bacteria | bacteria | species | 67829 | click here | 
| clostridium perfringens | No | species | bacteria | bacteria | species | 1502 | click here | 
| cooperia pectinata | No | species | eukaryota | invertebrates | species | 420891 | click here | 
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here | 
| culicoides biguttatus | No | species |   |   | species | 1890933 | click here | 
| culicoides debilipalpis | No | species |   |   | species | 2510298 | click here | 
| culicoides imicola | No | species | eukaryota | invertebrates | species | 88399 | click here | 
| culicoides obsoletus | No | species | eukaryota | invertebrates | species | 289301 | click here | 
| culicoides pallidicornis | No | species |   |   | species | 992228 | click here | 
| culicoides pulicaris | No | species | eukaryota | invertebrates | species | 177093 | click here | 
| culicoides punctatus | No | species | eukaryota | invertebrates | species | 41821 | click here | 
| culicoides scoticus | No | species | eukaryota | invertebrates | species | 289302 | click here | 
| culicoides sonorensis | No | species | eukaryota | invertebrates | species | 179676 | click here | 
| culicoides stellifer | No | species |   |   | species | 1890934 | click here | 
| deer faeces associated circular dna virus 1 | No | no rank |   |   | species | 1843767 | click here | 
| dictyocaulus eckerti | No | species | eukaryota | invertebrates | species | 44604 | click here | 
| dictyocaulus sp. p6a1 | No | no rank | eukaryota | invertebrates | species | 216873 | click here | 
| dictyocaulus viviparus | No | species | eukaryota | invertebrates | species | 29172 | click here | 
| eimeria auburnensis | No | species | eukaryota | invertebrates | species | 310757 | click here | 
| elaphostrongylus cervi | No | species | eukaryota | invertebrates | species | 192625 | click here | 
| entamoeba bovis | No | species | eukaryota | invertebrates | species | 715123 | click here | 
| entamoeba sp. rl8 | No | no rank |   |   | species | 1769628 | click here | 
| enterocytozoon bieneusi | No | species | eukaryota | plants | species | 31281 | click here | 
| environmental samples | No |   |   | environmental samples | no rank | 333811 | click here | 
| environmental samples | No |   |   | environmental samples | no rank | 359183 | click here | 
| environmental samples | No |   |   |   | no rank | 1629145 | click here | 
| epizootic hemorrhagic disease virus | No | species | viruses and viroids | viruses | species | 40054 | click here | 
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here | 
| fallow deer lymphotropic herpesvirus | No | species | viruses and viroids | viruses | species | 333342 | click here | 
| fasciola hepatica | No | species | eukaryota | invertebrates | species | 6192 | click here | 
| fascioloides magna | No | species | eukaryota | invertebrates | species | 394415 | click here | 
| francisella tularensis | No | species | bacteria | bacteria | species | 263 | click here | 
| fusobacterium necrophorum | No | species | bacteria | bacteria | species | 859 | click here | 
| giardia intestinalis | No | species | eukaryota | invertebrates | species | 5741 | click here | 
| haemaphysalis longicornis | No | species | eukaryota | invertebrates | species | 44386 | click here | 
| haemonchus contortus | No | species | eukaryota | invertebrates | species | 6289 | click here | 
| human parainfluenza virus 3 | No | species | viruses and viroids | viruses | species | 11216 | click here | 
| lawsonia intracellularis | No | species | bacteria | bacteria | species | 29546 | click here | 
| leptospira interrogans | No | species | bacteria | bacteria | species | 173 | click here | 
| listeria monocytogenes | No | species | bacteria | bacteria | species | 1639 | click here | 
| mannheimia granulomatis | No | species | bacteria | bacteria | species | 85402 | click here | 
| mycobacterium avium | No | species | bacteria | bacteria | species | 1764 | click here | 
| mycobacterium avium subsp. paratuberculosis | No | subspecies | bacteria | bacteria | subspecies | 1770 | click here | 
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here | 
| nematodirus battus | No | species | eukaryota | invertebrates | species | 28839 | click here | 
| nematodirus filicollis | No | species | eukaryota | invertebrates | species | 61840 | click here | 
| neospora caninum | No | species | eukaryota | invertebrates | species | 29176 | click here | 
| oesophagostomum columbianum | No | species | eukaryota | invertebrates | species | 85896 | click here | 
| oesophagostomum radiatum | No | species | eukaryota | invertebrates | species | 52565 | click here | 
| oesophagostomum sikae | No | species |   |   | species | 1544665 | click here | 
| oesophagostomum venulosum | No | species | eukaryota | invertebrates | species | 63234 | click here | 
| orthohepevirus a | No | species |   |   | species | 1678143 | click here | 
| ostertagia arctica | No | species | eukaryota | invertebrates | species | 106945 | click here | 
| ostertagia leptospicularis | No | species | eukaryota | invertebrates | species | 52815 | click here | 
| ovine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 10398 | click here | 
| paramphistomum leydeni | No | species | eukaryota | invertebrates | species | 851063 | click here |