| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| argas hermanni | Yes | species | eukaryota | invertebrates | species | 44320 | click here |
| asio otus herpesvirus | Yes | species | | | species | 2489501 | click here |
| aspergillus fumigatus | Yes | species | eukaryota | plants | species | 746128 | click here |
| aspergillus niger | Yes | species | eukaryota | plants | species | 5061 | click here |
| aviadenovirus sp. | Yes | species | | | species | 2217649 | click here |
| avian coronavirus | Yes | species | viruses and viroids | viruses | species | 694014 | click here |
| avian hepatitis e virus | No | no rank | viruses and viroids | viruses | no rank | 172851 | click here |
| avian hepatitis e virus | Yes | no rank | viruses and viroids | viruses | no rank | 172851 | click here |
| avian orthoavulavirus 1 | No | species | | | species | 2560319 | click here |
| avian orthoavulavirus 1 | Yes | species | | | species | 2560319 | click here |
| avian orthoreovirus | Yes | species | viruses and viroids | viruses | species | 38170 | click here |
| avipoxvirus isolate south korea | Yes | species | | | species | 1294112 | click here |
| beak and feather disease virus | Yes | species | viruses and viroids | viruses | species | 77856 | click here |
| betacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 694003 | click here |
| bordetella avium | No | species | bacteria | bacteria | species | 521 | click here |
| borrelia hermsii | Yes | species | bacteria | bacteria | species | 140 | click here |
| borreliella burgdorferi | Yes | species | bacteria | bacteria | species | 139 | click here |
| brachylecithum strigis | Yes | species | | | species | 1776885 | click here |
| bubo bubo herpesvirus | Yes | species | | | species | 2489502 | click here |
| caenorhabditis elegans | Yes | species | eukaryota | invertebrates | species | 6239 | click here |
| campylobacter jejuni | Yes | species | bacteria | bacteria | species | 197 | click here |
| capillaria tenuissima | Yes | species | eukaryota | invertebrates | species | 455385 | click here |
| carnus hemapterus | Yes | species | | | species | 1434729 | click here |
| centrorhynchus aluconis | Yes | species | | invertebrates | species | 1795424 | click here |
| centrorhynchus conspectus | Yes | species | eukaryota | invertebrates | species | 45084 | click here |
| chlamydia pneumoniae | Yes | species | bacteria | bacteria | species | 83558 | click here |
| chlamydia psittaci | Yes | species | bacteria | bacteria | species | 83554 | click here |
| colpocephalum turbinatum | Yes | species | eukaryota | invertebrates | species | 439215 | click here |
| columbid alphaherpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 93386 | click here |
| cryptococcus neoformans | Yes | species | eukaryota | plants | species | 5207 | click here |
| cryptosporidium sp. ys-2017 | Yes | no rank | | | species | 2020479 | click here |
| culex erraticus | Yes | species | eukaryota | invertebrates | species | 42427 | click here |
| culex nigripalpus | Yes | species | eukaryota | invertebrates | species | 42429 | click here |
| culex restuans | Yes | species | eukaryota | invertebrates | species | 38742 | click here |
| culex salinarius | Yes | species | eukaryota | invertebrates | species | 38743 | click here |
| culicoides impunctatus | Yes | species | eukaryota | invertebrates | species | 177094 | click here |
| culicoides nubeculosus | Yes | species | eukaryota | invertebrates | species | 144565 | click here |
| culiseta melanura | Yes | species | eukaryota | invertebrates | species | 329109 | click here |
| cyathostoma americana | Yes | species | | | species | 1827351 | click here |
| eimeria sp. | Yes | species | | | species | 1729940 | click here |
| enterobacter hormaechei | Yes | species | bacteria | bacteria | species | 158836 | click here |
| enterococcus faecium | Yes | species | bacteria | bacteria | species | 1352 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| escherichia albertii | Yes | species | bacteria | bacteria | species | 208962 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| eucoleus dispar | Yes | species | eukaryota | invertebrates | species | 455383 | click here |
| filarioidea sp. ja-2012 | Yes | no rank | | | species | 1237088 | click here |
| gallid herpesvirus 2 | Yes | species | viruses and viroids | viruses | species | 10390 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| glaucalges attenuatus | Yes | species | eukaryota | invertebrates | species | 483138 | click here |
| glaucalges sp. n. md-2007 | Yes | no rank | eukaryota | invertebrates | species | 483137 | click here |
| gongylonema pulchrum | Yes | species | eukaryota | invertebrates | species | 637853 | click here |
| h5n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102793 | click here |
| h5n6 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 329376 | click here |
| h7n9 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 333278 | click here |
| h9n2 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102796 | click here |
| haemaphysalis punctata | Yes | species | eukaryota | invertebrates | species | 49204 | click here |
| haemoproteus noctuae | Yes | species | | | species | 1678874 | click here |
| haemoproteus sp. | Yes | species | eukaryota | invertebrates | species | 191679 | click here |
| haemoproteus sp. aefun03 | Yes | no rank | | | species | 1684744 | click here |
| haemoproteus sp. asi-2012 | Yes | no rank | | | species | 1215357 | click here |
| haemoproteus sp. awow25-169 | Yes | no rank | eukaryota | invertebrates | species | 531333 | click here |
| haemoproteus sp. baow5465 | Yes | no rank | eukaryota | invertebrates | species | 531334 | click here |
| haemoproteus sp. baow574 | Yes | no rank | eukaryota | invertebrates | species | 531335 | click here |
| haemoproteus sp. baow93-20-64 | Yes | no rank | eukaryota | invertebrates | species | 531336 | click here |
| haemoproteus sp. bo6 | Yes | no rank | | | species | 1971606 | click here |
| haemoproteus sp. brow06-201 | Yes | no rank | eukaryota | invertebrates | species | 531337 | click here |
| haemoproteus sp. browbo26 | Yes | no rank | eukaryota | invertebrates | species | 531338 | click here |
| haemoproteus sp. h1 kl-2014 | Yes | no rank | | | species | 1447889 | click here |
| haemoproteus sp. h2 kl-2014 | Yes | no rank | | | species | 1447890 | click here |
| haemoproteus sp. h3 kl-2014 | Yes | no rank | | | species | 1447891 | click here |
| haemoproteus sp. h4 kl-2014 | Yes | no rank | | | species | 1447892 | click here |
| haemoproteus sp. h5 kl-2014 | Yes | no rank | | | species | 1447893 | click here |
| haemoproteus sp. hotusco05 | Yes | no rank | | | species | 1465593 | click here |
| haemoproteus sp. h-stal2 | Yes | no rank | eukaryota | invertebrates | species | 447576 | click here |
| haemoproteus sp. ku112 | Yes | no rank | | | species | 1859104 | click here |
| haemoproteus sp. ku120 | Yes | no rank | | | species | 1859105 | click here |
| haemoproteus sp. ku127 | Yes | no rank | | | species | 1508511 | click here |
| haemoproteus sp. ku132 | Yes | no rank | | | species | 1859106 | click here |
| haemoproteus sp. ku163 | Yes | no rank | | | species | 1859107 | click here |
| haemoproteus sp. ku181 | Yes | no rank | | | species | 1508512 | click here |
| haemoproteus sp. ku200 | Yes | no rank | | | species | 1859108 | click here |
| haemoproteus sp. ku202 | Yes | no rank | | | species | 1859109 | click here |
| haemoproteus sp. ku203 | Yes | no rank | | | species | 1859110 | click here |
| haemoproteus sp. ku222 | Yes | no rank | | | species | 1859111 | click here |
| haemoproteus sp. ku226 | Yes | no rank | | | species | 1859112 | click here |
| haemoproteus sp. ku234 | Yes | no rank | | | species | 1859113 | click here |
| haemoproteus sp. ku248 | Yes | no rank | | | species | 1859114 | click here |
| haemoproteus sp. ku250 | Yes | no rank | | | species | 1859115 | click here |
| haemoproteus sp. ku259 | Yes | no rank | | | species | 1859116 | click here |
| haemoproteus sp. ku284 | Yes | no rank | | | species | 1859117 | click here |
| haemoproteus sp. ku318 | Yes | no rank | | | species | 1859118 | click here |
| haemoproteus sp. ku71 | Yes | no rank | | | species | 1859119 | click here |
| haemoproteus sp. ku86 | Yes | no rank | | | species | 1859120 | click here |
| haemoproteus sp. leow38281 | Yes | no rank | eukaryota | invertebrates | species | 531339 | click here |
| haemoproteus sp. leow5592 | Yes | no rank | eukaryota | invertebrates | species | 531340 | click here |