| alphacoronavirus tt-2016a | No | species | | | species | 1805601 | click here |
| alphacoronavirus ukma1 | No | species | | | species | 2520503 | click here |
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| anoplocephaloides cf. variabilis vh-2004 | No | no rank | eukaryota | invertebrates | species | 307599 | click here |
| anoplocephaloides dentata | No | species | eukaryota | invertebrates | species | 70593 | click here |
| arostrilepis microtis | No | species | | | species | 1297892 | click here |
| astrovirus sp. | No | no rank | viruses and viroids | viruses | species | 178530 | click here |
| babesia microti | No | species | eukaryota | invertebrates | species | 5868 | click here |
| bartonella doshiae | No | species | bacteria | bacteria | species | 33044 | click here |
| bartonella grahamii | No | species | bacteria | bacteria | species | 33045 | click here |
| bartonella taylorii | No | species | bacteria | bacteria | species | 33046 | click here |
| borreliella afzelii | No | species | bacteria | bacteria | species | 29518 | click here |
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here |
| candidatus neoehrlichia mikurensis | No | species | bacteria | bacteria | species | 89586 | click here |
| cardiovirus a | No | species | | | species | 1821749 | click here |
| carolinensis minutus | No | species | eukaryota | invertebrates | species | 239492 | click here |
| coronavirus rcov/d_rmu10_1182/mic_agr/ger/2010 | No | species | | | species | 1679885 | click here |
| cowpox virus | No | species | viruses and viroids | viruses | species | 10243 | click here |
| cryptosporidium sp. | No | species | eukaryota | invertebrates | species | 90962 | click here |
| echinococcus multilocularis | No | species | eukaryota | invertebrates | species | 6211 | click here |
| ectromelia virus | No | species | viruses and viroids | viruses | species | 12643 | click here |
| ehrlichia muris | No | species | bacteria | bacteria | species | 35795 | click here |
| eimeria apionodes | No | species | | | species | 1316033 | click here |
| eimeria sp. ex microtus agrestis | No | no rank | | | species | 1910765 | click here |
| encephalomyocarditis virus | No | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| entamoeba sp. rl11 | No | no rank | | | species | 1769627 | click here |
| eurotaenia gracilis | No | species | eukaryota | invertebrates | species | 1577178 | click here |
| francisella tularensis | No | species | bacteria | bacteria | species | 263 | click here |
| hoplopleura acanthopus | No | species | | | species | 1771386 | click here |
| hydatigera sp. b al-2015 | No | no rank | | | species | 1710883 | click here |
| hydatigera taeniaeformis | No | species | eukaryota | invertebrates | species | 6205 | click here |
| kielder hantavirus | No | species | | | species | 2072643 | click here |
| leptospira interrogans | No | species | bacteria | bacteria | species | 173 | click here |
| ljungan virus | No | species | viruses and viroids | viruses | species | 172314 | click here |
| louping ill virus | No | species | viruses and viroids | viruses | species | 11086 | click here |
| lymphocytic choriomeningitis mammarenavirus | No | species | viruses and viroids | viruses | species | 11623 | click here |
| microticola blanchardi | No | species | eukaryota | invertebrates | species | 1577183 | click here |
| microtus agrestis cytomegalovirus 1 | No | species | viruses and viroids | viruses | species | 431626 | click here |
| murid herpesvirus 4 | No | species | viruses and viroids | viruses | species | 33708 | click here |
| murine pneumonia virus | No | species | viruses and viroids | viruses | species | 11263 | click here |
| mycobacterium microti | No | species | bacteria | bacteria | species | 1806 | click here |
| notocotylus malhamensis | No | species | | | species | 1255119 | click here |
| paranoplocephala omphalodes | No | species | eukaryota | invertebrates | species | 218526 | click here |
| pneumocystis carinii | No | species | eukaryota | plants | species | 4754 | click here |
| puumala orthohantavirus | No | species | | | species | 1980486 | click here |
| rabies virus | No | species | viruses and viroids | viruses | species | 11292 | click here |
| rat coronavirus | No | no rank | viruses and viroids | viruses | no rank | 31632 | click here |
| rickettsia helvetica | No | species | bacteria | bacteria | species | 35789 | click here |
| rodent hepatovirus | No | species | | | species | 1745247 | click here |
| rodent torque teno virus 1 | No | species | | | species | 1514664 | click here |
| rodent torque teno virus 2 | No | species | | | species | 1514665 | click here |
| rodentolepis asymmetrica | No | species | eukaryota | invertebrates | species | 70665 | click here |
| rotavirus a | No | species | viruses and viroids | viruses | species | 28875 | click here |
| rous sarcoma virus | No | species | viruses and viroids | viruses | species | 11886 | click here |
| semliki forest virus | No | species | viruses and viroids | viruses | species | 11033 | click here |
| sendai virus | No | species | viruses and viroids | viruses | species | 11191 | click here |
| staphylococcus aureus | No | species | bacteria | bacteria | species | 1280 | click here |
| taenia crassiceps | No | species | eukaryota | invertebrates | species | 6207 | click here |
| taenia polyacantha | No | species | eukaryota | invertebrates | species | 159984 | click here |
| tatenale orthohantavirus | No | species | | | species | 2651812 | click here |
| tatenale virus | No | species | | | species | 1313091 | click here |
| tick-borne encephalitis virus | No | species | viruses and viroids | viruses | species | 11084 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| traemmersee orthohantavirus | No | species | | | species | 2654407 | click here |
| trichuris arvicolae | No | species | eukaryota | invertebrates | species | 153940 | click here |
| trypanosoma microti | No | species | eukaryota | invertebrates | species | 78085 | click here |
| tula orthohantavirus | No | species | | | species | 1980494 | click here |
| uncultured bacterium | No | no rank | bacteria | environmental samples | species | 77133 | click here |
| uncultured bartonella sp. | No | no rank | bacteria | environmental samples | species | 104108 | click here |
| uncultured borrelia sp. | No | no rank | bacteria | environmental samples | species | 198435 | click here |
| uncultured borreliella sp. | No | no rank | bacteria | environmental samples | species | 302170 | click here |
| versteria mustelae | No | species | | invertebrates | species | 1434714 | click here |
| yersinia intermedia | No | species | bacteria | bacteria | species | 631 | click here |
| yersinia kristensenii | No | species | bacteria | bacteria | species | 28152 | click here |