| acrocalymma vagum | Yes | species | eukaryota | plants | species | 1589764 | click here |
| alticini sp. sd-2012 | Yes | no rank | | | species | 1206595 | click here |
| ambrosia asymptomatic virus 1 | Yes | species | | | species | 1417304 | click here |
| aphis asclepiadis | No | species | eukaryota | invertebrates | species | 715372 | click here |
| aphis asclepiadis | Yes | species | eukaryota | invertebrates | species | 715372 | click here |
| aphis nerii | Yes | species | eukaryota | invertebrates | species | 100479 | click here |
| aphis sp. 3 dml-2014 | Yes | no rank | | | species | 1457203 | click here |
| asclepias asymptomatic virus | Yes | species | | | species | 1027880 | click here |
| asclepias potyvirus a | Yes | species | | | species | 2593924 | click here |
| 'asclepias syriaca' phytoplasma | Yes | species | | | species | 1385616 | click here |
| asclepias yellow vein virus | Yes | species | | | species | 2567871 | click here |
| cadophora sp. ref028 | Yes | no rank | | | species | 1159973 | click here |
| cercosporidium californicum | Yes | species | | | species | 2059792 | click here |
| cycnia tenera | Yes | species | eukaryota | invertebrates | species | 214110 | click here |
| danaus gilippus | Yes | species | eukaryota | invertebrates | species | 166024 | click here |
| danaus plexippus | Yes | species | eukaryota | invertebrates | species | 13037 | click here |
| diaporthe cucurbitae | Yes | species | | | species | 1590087 | click here |
| diaporthe novem | Yes | species | | | species | 1035935 | click here |
| elsinoe asclepiadea | Yes | species | | | species | 1978787 | click here |
| erysiphe aquilegiae | Yes | species | eukaryota | plants | species | 79297 | click here |
| euchaetes egle | Yes | species | eukaryota | invertebrates | species | 214131 | click here |
| fungal sp. | Yes | species | | | species | 1709941 | click here |
| fungal sp. e15001b | Yes | no rank | | | species | 1568403 | click here |
| fusarium oxysporum | Yes | species | eukaryota | plants | species | 5507 | click here |
| fusarium sp. e11230a | Yes | no rank | | | species | 1420330 | click here |
| golovinomyces ambrosiae | Yes | species | | | species | 1101212 | click here |
| grapevine pinot gris virus | Yes | species | | | species | 1051792 | click here |
| hypocreales sp. ref173 | Yes | no rank | | | species | 1160030 | click here |
| labidomera clivicollis | Yes | species | eukaryota | invertebrates | species | 131652 | click here |
| largus sp. sd-2012 | Yes | no rank | | | species | 1206593 | click here |
| lerina incarnata | Yes | species | | | species | 1206599 | click here |
| liriomyza asclepiadis | Yes | species | | | species | 1200980 | click here |
| liriomyza sp. sd-2012 | Yes | no rank | | | species | 1200981 | click here |
| lygaeus kalmii | No | species | eukaryota | invertebrates | species | 683892 | click here |
| lygaeus kalmii | Yes | species | eukaryota | invertebrates | species | 683892 | click here |
| milkweed yellows phytoplasma | No | subspecies | bacteria | bacteria | species | 208434 | click here |
| milkweed yellows phytoplasma str. mw1 | Yes | no rank | | | no rank | 1196417 | click here |
| oncopeltus fasciatus | No | species | eukaryota | invertebrates | species | 7536 | click here |
| oncopeltus fasciatus | Yes | species | eukaryota | invertebrates | species | 7536 | click here |
| passalora californica | Yes | species | | | species | 983956 | click here |
| puccinia bartholomaei | Yes | species | eukaryota | plants | species | 444470 | click here |
| rhyssomatus lineaticollis | Yes | species | | | species | 1206597 | click here |
| tetranychus okinawanus | Yes | species | eukaryota | invertebrates | species | 381748 | click here |
| tetraopes tetrophthalmus | Yes | species | | | species | 1206596 | click here |
| thrips tabaci | Yes | species | eukaryota | invertebrates | species | 161014 | click here |
| uncultured acaulospora | Yes | no rank | eukaryota | environmental samples | species | 254030 | click here |
| uncultured agaricomycetes | Yes | no rank | eukaryota | environmental samples | species | 253819 | click here |
| uncultured archaeorhizomycetes | Yes | no rank | eukaryota | plants | species | 480079 | click here |
| uncultured archaeospora | Yes | no rank | eukaryota | environmental samples | species | 235084 | click here |
| uncultured ascomycota | Yes | no rank | eukaryota | environmental samples | species | 175243 | click here |
| uncultured bacterium | Yes | no rank | bacteria | environmental samples | species | 77133 | click here |
| uncultured basidiomycota | Yes | no rank | eukaryota | environmental samples | species | 175244 | click here |
| uncultured botryosphaeriaceae | Yes | no rank | eukaryota | environmental samples | species | 310479 | click here |
| uncultured capnodiales | Yes | no rank | eukaryota | environmental samples | species | 515147 | click here |
| uncultured chaetothyriales | Yes | no rank | eukaryota | environmental samples | species | 575976 | click here |
| uncultured chytridiomycota | Yes | no rank | eukaryota | environmental samples | species | 175247 | click here |
| uncultured claroideoglomus | Yes | no rank | | | species | 1150877 | click here |
| uncultured cryptomycota | Yes | no rank | | | species | 1130064 | click here |
| uncultured cystobasidiomycetes | Yes | no rank | | | species | 1872718 | click here |
| uncultured diversispora | Yes | no rank | eukaryota | environmental samples | species | 373545 | click here |
| uncultured dominikia | Yes | no rank | | | species | 1736706 | click here |
| uncultured dothideomycetes | Yes | no rank | eukaryota | environmental samples | species | 209475 | click here |
| uncultured eurotiales | Yes | no rank | eukaryota | environmental samples | species | 515150 | click here |
| uncultured eurotiomycetes | Yes | no rank | eukaryota | environmental samples | species | 248125 | click here |
| uncultured exobasidiomycetes | Yes | no rank | eukaryota | environmental samples | species | 696413 | click here |
| uncultured fungus | Yes | no rank | eukaryota | environmental samples | species | 175245 | click here |
| uncultured funneliformis | Yes | no rank | | | species | 1147122 | click here |
| uncultured geoglossales | Yes | no rank | | | species | 1500373 | click here |
| uncultured gigasporaceae | Yes | no rank | eukaryota | environmental samples | species | 257791 | click here |
| uncultured glomeromycetes | Yes | no rank | | | species | 1144505 | click here |
| uncultured glomeromycota | Yes | no rank | eukaryota | environmental samples | species | 241622 | click here |
| uncultured glomus | Yes | no rank | eukaryota | environmental samples | species | 231055 | click here |
| uncultured helotiales | Yes | no rank | eukaryota | environmental samples | species | 292464 | click here |
| uncultured lecanoromycetes | Yes | no rank | eukaryota | environmental samples | species | 587033 | click here |
| uncultured leotiomycetes | Yes | no rank | eukaryota | environmental samples | species | 248121 | click here |
| uncultured microbotryomycetes | Yes | no rank | eukaryota | environmental samples | species | 362226 | click here |
| uncultured mortierellomycotina | Yes | no rank | | | species | 1553427 | click here |
| uncultured mucorales | Yes | no rank | eukaryota | environmental samples | species | 358438 | click here |
| uncultured onygenales | Yes | no rank | eukaryota | environmental samples | species | 227717 | click here |
| uncultured orbiliales | Yes | no rank | eukaryota | environmental samples | species | 839885 | click here |
| uncultured paraglomeraceae | Yes | no rank | eukaryota | environmental samples | species | 487659 | click here |
| uncultured paraglomus | Yes | no rank | eukaryota | environmental samples | species | 231236 | click here |
| uncultured pezizomycetes | Yes | no rank | eukaryota | environmental samples | species | 707990 | click here |
| uncultured pleosporales | Yes | no rank | eukaryota | environmental samples | species | 209472 | click here |
| uncultured pucciniomycetes | Yes | no rank | | | species | 1367544 | click here |
| uncultured rhizophagus | Yes | no rank | | | species | 1147121 | click here |
| uncultured rhytismatales | Yes | no rank | eukaryota | environmental samples | species | 581220 | click here |
| uncultured saccharomycetes | Yes | no rank | eukaryota | environmental samples | species | 212404 | click here |
| uncultured sordariomycetes | Yes | no rank | eukaryota | environmental samples | species | 586223 | click here |
| uncultured taphrinales | Yes | no rank | | | species | 1500355 | click here |
| uncultured thelebolales | Yes | no rank | eukaryota | environmental samples | species | 915252 | click here |
| uncultured tremellomycetes | Yes | no rank | eukaryota | environmental samples | species | 543743 | click here |
| uncultured ustilaginomycetes | Yes | no rank | eukaryota | environmental samples | species | 282507 | click here |
| uncultured venturiales | Yes | no rank | | | species | 1763329 | click here |
| uncultured verrucariales | Yes | no rank | eukaryota | environmental samples | species | 452346 | click here |
| uncultured virus | Yes | species | viruses and viroids | environmental samples | species | 340016 | click here |