| aelurostrongylus abstrusus | Yes | species | eukaryota | invertebrates | species | 321389 | click here |
| alaria alata | Yes | species | eukaryota | invertebrates | species | 138590 | click here |
| alaria marcianae | Yes | species | | | species | 1684801 | click here |
| alaria mustelae | Yes | species | eukaryota | invertebrates | species | 669500 | click here |
| aleutian mink disease virus | Yes | species | viruses and viroids | viruses | species | 28314 | click here |
| alphacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 693997 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| ancylostoma braziliense | Yes | species | eukaryota | invertebrates | species | 369059 | click here |
| ancylostoma caninum | Yes | species | eukaryota | invertebrates | species | 29170 | click here |
| ancylostoma tubaeforme | Yes | species | eukaryota | invertebrates | species | 53327 | click here |
| anopheles atroparvus | Yes | species | eukaryota | invertebrates | species | 41427 | click here |
| babesia felis | Yes | species | eukaryota | invertebrates | species | 124135 | click here |
| babesia sp. coco | Yes | no rank | eukaryota | invertebrates | species | 279972 | click here |
| bartonella alsatica | Yes | species | bacteria | bacteria | species | 52764 | click here |
| bartonella clarridgeiae | Yes | species | bacteria | bacteria | species | 56426 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| bartonella koehlerae | Yes | species | bacteria | bacteria | species | 92181 | click here |
| bartonella koehlerae subsp. bothieri | Yes | subspecies | | | subspecies | 1395081 | click here |
| bartonella rochalimae | Yes | species | bacteria | bacteria | species | 395923 | click here |
| besnoitia darlingi | Yes | species | eukaryota | invertebrates | species | 190281 | click here |
| blastocystis sp. | No | species | eukaryota | plants | species | 46767 | click here |
| borna disease virus | Yes | species | viruses and viroids | viruses | species | 12455 | click here |
| caenorhabditis brenneri | Yes | species | eukaryota | invertebrates | species | 135651 | click here |
| candidatus mycoplasma haemominutum | Yes | species | bacteria | bacteria | species | 209446 | click here |
| candidatus mycoplasma turicensis | Yes | species | bacteria | bacteria | species | 346879 | click here |
| canine adenovirus 1 | Yes | no rank | viruses and viroids | viruses | no rank | 10512 | click here |
| canine distemper virus | Yes | species | viruses and viroids | viruses | species | 11232 | click here |
| canine mastadenovirus a | Yes | species | viruses and viroids | viruses | species | 10537 | click here |
| canine parvovirus | Yes | no rank | viruses and viroids | viruses | no rank | 10788 | click here |
| capillaria aerophila | Yes | species | | | species | 1172388 | click here |
| capillaria putorii | Yes | species | | | species | 1239594 | click here |
| carnivore protoparvovirus 1 | Yes | species | | | species | 1511906 | click here |
| clostridium septicum | Yes | species | bacteria | bacteria | species | 1504 | click here |
| coccidioides immitis | Yes | species | eukaryota | plants | species | 5501 | click here |
| cowpox virus | Yes | species | viruses and viroids | viruses | species | 10243 | click here |
| coxiella burnetii | Yes | species | bacteria | bacteria | species | 777 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| ctenocephalides canis | Yes | species | eukaryota | invertebrates | species | 50434 | click here |
| cylicospirura felineus | Yes | species | eukaryota | invertebrates | species | 663714 | click here |
| cylicospirura subaequalis | Yes | species | eukaryota | invertebrates | species | 663715 | click here |
| cystoisospora felis | Yes | species | eukaryota | invertebrates | species | 482539 | click here |
| cytauxzoon felis | Yes | species | eukaryota | invertebrates | species | 27996 | click here |
| cytauxzoon manul | Yes | species | eukaryota | invertebrates | species | 258482 | click here |
| cytauxzoon sp. | Yes | species | | | species | 1937407 | click here |
| cytauxzoon sp. 2026 | Yes | no rank | | | species | 1770600 | click here |
| cytauxzoon sp. 274h | Yes | no rank | | | species | 1770601 | click here |
| cytauxzoon sp. 274s | Yes | no rank | | | species | 1770602 | click here |
| cytauxzoon sp. 389h | Yes | no rank | | | species | 1770610 | click here |
| cytauxzoon sp. 4417 | Yes | no rank | eukaryota | invertebrates | species | 428575 | click here |
| cytauxzoon sp. aliso | Yes | no rank | eukaryota | invertebrates | species | 428573 | click here |
| cytauxzoon sp. enebro | Yes | no rank | eukaryota | invertebrates | species | 428574 | click here |
| cytauxzoon sp. ex iberian lynx | Yes | no rank | eukaryota | invertebrates | species | 259914 | click here |
| diphyllobothrium dendriticum | Yes | species | eukaryota | invertebrates | species | 28845 | click here |
| diphyllobothrium latum | Yes | species | eukaryota | invertebrates | species | 60516 | click here |
| dirofilaria immitis | Yes | species | eukaryota | invertebrates | species | 6287 | click here |
| echinococcus multilocularis | No | species | eukaryota | invertebrates | species | 6211 | click here |
| echinococcus multilocularis | Yes | species | eukaryota | invertebrates | species | 6211 | click here |
| echinococcus oligarthrus | Yes | species | eukaryota | invertebrates | species | 6212 | click here |
| enteric coronavirus | Yes | species | | | species | 28293 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| enterococcus faecium | Yes | species | bacteria | bacteria | species | 1352 | click here |
| enterococcus hirae | Yes | species | bacteria | bacteria | species | 1354 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| eucoleus aerophilus | Yes | species | | | species | 1237089 | click here |
| felid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10334 | click here |
| feline calicivirus | Yes | species | viruses and viroids | viruses | species | 11978 | click here |
| feline coronavirus | Yes | no rank | viruses and viroids | viruses | no rank | 12663 | click here |
| feline immunodeficiency virus | Yes | species | viruses and viroids | viruses | species | 11673 | click here |
| feline infectious peritonitis virus | Yes | no rank | viruses and viroids | viruses | no rank | 11135 | click here |
| feline leukemia virus | Yes | species | viruses and viroids | viruses | species | 11768 | click here |
| feline panleukopenia virus | Yes | no rank | viruses and viroids | viruses | no rank | 10786 | click here |
| feline parvovirus | Yes | species | viruses and viroids | viruses | species | 10785 | click here |
| francisella tularensis | Yes | species | bacteria | bacteria | species | 263 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| gut metagenome | Yes | species | unclassified and other | environmental samples | species | 749906 | click here |
| haemaphysalis erinacei | Yes | species | | | species | 1133424 | click here |
| helicobacter heilmannii | Yes | species | bacteria | bacteria | species | 35817 | click here |
| hepatozoon felis | Yes | species | eukaryota | invertebrates | species | 294745 | click here |
| hepatozoon silvestris | Yes | species | | | species | 1929151 | click here |
| hepatozoon sp. ex lynx rufus kea-2011 | Yes | no rank | | | species | 1080280 | click here |
| heterobilharzia americana | Yes | species | eukaryota | invertebrates | species | 39320 | click here |
| hyalomma asiaticum | Yes | species | eukaryota | invertebrates | species | 266040 | click here |
| hydatigera taeniaeformis | Yes | species | eukaryota | invertebrates | species | 6205 | click here |
| leishmania infantum | Yes | species | eukaryota | invertebrates | species | 5671 | click here |
| leptospira interrogans | Yes | species | bacteria | bacteria | species | 173 | click here |
| lion lentivirus | Yes | no rank | viruses and viroids | viruses | no rank | 289357 | click here |
| lynx canadensis associated microvirus clp 9366 | Yes | species | | | species | 2219140 | click here |
| lynx canadensis associated microvirus clp 9413 | Yes | species | | | species | 2219141 | click here |
| lynx canadensis faeces associated genomovirus cl1 128 | Yes | species | | | species | 2219122 | click here |
| lynx canadensis faeces associated genomovirus cl1 148 | Yes | species | | | species | 2219123 | click here |
| lynx canadensis faeces associated genomovirus cl1 46 | Yes | species | | | species | 2219124 | click here |
| lynx canadensis faeces associated genomovirus cl1 48 | Yes | species | | | species | 2219125 | click here |
| lynx canadensis faeces associated genomovirus cl1 58 | Yes | species | | | species | 2219126 | click here |
| lynx canadensis faeces associated genomovirus cl1 71 | Yes | species | | | species | 2219127 | click here |
| lynx canadensis faeces associated genomovirus cl1 74 | Yes | species | | | species | 2219128 | click here |
| lynx canadensis faeces associated genomovirus cl3 128 | Yes | species | | | species | 2219129 | click here |
| lynx canadensis faeces associated genomovirus cl4 128 | Yes | species | | | species | 2219130 | click here |
| lynx canadensis faeces associated genomovirus cl4 71 | Yes | species | | | species | 2219131 | click here |
| lynx canadensis faeces associated genomovirus cl5 48 | Yes | species | | | species | 2219132 | click here |