| [clostridium] bolteae | Yes | species | bacteria | bacteria | species | 208479 | click here |
| [clostridium] hylemonae | Yes | species | bacteria | bacteria | species | 89153 | click here |
| [clostridium] innocuum | Yes | species | bacteria | bacteria | species | 1522 | click here |
| [clostridium] piliforme | No | species | bacteria | bacteria | species | 1524 | click here |
| [clostridium] piliforme | Yes | species | bacteria | bacteria | species | 1524 | click here |
| [clostridium] symbiosum | Yes | species | bacteria | bacteria | species | 1512 | click here |
| [pasteurella] pneumotropica | No | species | bacteria | bacteria | species | 758 | click here |
| [pasteurella] pneumotropica | Yes | species | bacteria | bacteria | species | 758 | click here |
| [ruminococcus] gnavus | Yes | species | bacteria | bacteria | species | 33038 | click here |
| [ruminococcus] torques | Yes | species | bacteria | bacteria | species | 33039 | click here |
| acanthotrema tridactyla | Yes | species | | | species | 1761661 | click here |
| acetatifactor muris | Yes | species | | | species | 879566 | click here |
| acetobacter sp. | Yes | species | bacteria | bacteria | species | 440 | click here |
| achromobacter sp. ynutcm yj221 | No | no rank | | | species | 1761982 | click here |
| acinetobacter sp. | Yes | species | bacteria | bacteria | species | 472 | click here |
| actinobacteria bacterium | Yes | species | | | species | 1883427 | click here |
| actinomyces sp. | Yes | species | bacteria | bacteria | species | 29317 | click here |
| adenovirus predict_adv-26 | Yes | species | | | species | 2710960 | click here |
| adenovirus predict_adv-31 | Yes | species | | | species | 2710965 | click here |
| adenovirus predict_adv-90 | Yes | species | | | species | 2558901 | click here |
| aedes aegypti | Yes | species | eukaryota | invertebrates | species | 7159 | click here |
| aedes albopictus | Yes | species | eukaryota | invertebrates | species | 7160 | click here |
| aichivirus a | Yes | species | viruses and viroids | viruses | species | 72149 | click here |
| akkermansia muciniphila | Yes | species | bacteria | bacteria | species | 239935 | click here |
| alaria alata | Yes | species | eukaryota | invertebrates | species | 138590 | click here |
| alistipes finegoldii | Yes | species | bacteria | bacteria | species | 214856 | click here |
| alistipes sp. | Yes | species | | | species | 1872444 | click here |
| alphacoronavirus tt-2016a | Yes | species | | | species | 1805601 | click here |
| alphacoronavirus ukrn3 | Yes | species | | | species | 2520504 | click here |
| amblyomma cordiferum | Yes | species | | | species | 2497096 | click here |
| anaerotruncus colihominis | Yes | species | bacteria | bacteria | species | 169435 | click here |
| anaplasma bovis | Yes | species | bacteria | bacteria | species | 186733 | click here |
| anaplasma ovis | Yes | species | bacteria | bacteria | species | 142058 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| anaplasma sp. zj34/2006 | Yes | no rank | bacteria | bacteria | species | 439610 | click here |
| anatrichosoma haycocki | Yes | species | eukaryota | invertebrates | species | 119101 | click here |
| ancylostoma caninum | Yes | species | eukaryota | invertebrates | species | 29170 | click here |
| andes orthohantavirus | Yes | species | | | species | 1980456 | click here |
| anelloviridae sp. | No | species | | | species | 2055263 | click here |
| anelloviridae sp. | Yes | species | | | species | 2055263 | click here |
| angiostrongylus cantonensis | Yes | species | eukaryota | invertebrates | species | 6313 | click here |
| angiostrongylus costaricensis | Yes | species | eukaryota | invertebrates | species | 334426 | click here |
| angiostrongylus mackerrasae | Yes | species | | | species | 1659310 | click here |
| angiostrongylus malaysiensis | Yes | species | eukaryota | invertebrates | species | 458178 | click here |
| angiostrongylus sp. dnus-2013-03-11-sm256 | Yes | no rank | | | species | 2015504 | click here |
| anjozorobe hantavirus | Yes | species | | | species | 1424613 | click here |
| anopheles gambiae | Yes | species | eukaryota | invertebrates | species | 7165 | click here |
| anopheles stephensi | Yes | species | eukaryota | invertebrates | species | 30069 | click here |
| aphanoascus terreus | Yes | species | eukaryota | plants | species | 121129 | click here |
| apodemus agrarius picornavirus | Yes | species | | | species | 2184393 | click here |
| araraquara virus | Yes | no rank | viruses and viroids | viruses | no rank | 139032 | click here |
| arcobacter sp. am70-1 | Yes | no rank | bacteria | bacteria | species | 235130 | click here |
| arenavirus dx1401 | Yes | species | | | species | 1481123 | click here |
| arenavirus sp. | Yes | no rank | viruses and viroids | viruses | species | 41118 | click here |
| armigeres obturbans | Yes | species | eukaryota | invertebrates | species | 149458 | click here |
| arteriviridae sp. | Yes | species | | | species | 2697055 | click here |
| arthroderma vanbreuseghemii | Yes | species | eukaryota | plants | species | 63407 | click here |
| ascomycota sp. ifm 59327 | Yes | no rank | eukaryota | plants | species | 796115 | click here |
| aspergillus sp. ifm 58443 | Yes | no rank | eukaryota | plants | species | 796111 | click here |
| aspiculuris tetraptera | No | species | eukaryota | invertebrates | species | 451377 | click here |
| aspiculuris tetraptera | Yes | species | eukaryota | invertebrates | species | 451377 | click here |
| astrovirus astv_rat1 | Yes | no rank | | | species | 1293421 | click here |
| astrovirus astv_rat4 | Yes | no rank | | | species | 1293422 | click here |
| astrovirus rat/rs116/hkg/2007 | Yes | no rank | viruses and viroids | viruses | species | 858505 | click here |
| astrovirus rat/rs118/hkg/2007 | Yes | no rank | viruses and viroids | viruses | species | 858506 | click here |
| astrovirus rat/rs122/hkg/2007 | Yes | no rank | viruses and viroids | viruses | species | 858507 | click here |
| astrovirus rat/rs126/hkg/2007 | Yes | no rank | viruses and viroids | viruses | species | 858508 | click here |
| astrovirus rat/rs297/hkg/2008 | Yes | no rank | viruses and viroids | viruses | species | 858509 | click here |
| astrovirus rat/rs299/hkg/2008 | Yes | no rank | viruses and viroids | viruses | species | 858510 | click here |
| astrovirus sp. | Yes | no rank | viruses and viroids | viruses | species | 178530 | click here |
| avibacterium gallinarum | No | species | bacteria | bacteria | species | 755 | click here |
| avibacterium gallinarum | Yes | species | bacteria | bacteria | species | 755 | click here |
| azospirillum sp. | Yes | no rank | bacteria | bacteria | species | 34012 | click here |
| babesia microti | No | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia microti | Yes | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia sp. | Yes | species | eukaryota | invertebrates | species | 35084 | click here |
| bacillus cereus | Yes | species | bacteria | bacteria | species | 1396 | click here |
| bacillus subtilis | Yes | species | bacteria | bacteria | species | 1423 | click here |
| bacillus velezensis | Yes | species | bacteria | bacteria | species | 492670 | click here |
| bacteroides nordii | Yes | species | bacteria | bacteria | species | 291645 | click here |
| bacteroides sp. | Yes | no rank | bacteria | bacteria | species | 29523 | click here |
| bacteroidetes bacterium | Yes | species | | | species | 1898104 | click here |
| bartonella coopersplainsensis | Yes | species | bacteria | bacteria | species | 481137 | click here |
| bartonella doshiae | Yes | species | bacteria | bacteria | species | 33044 | click here |
| bartonella elizabethae | Yes | species | bacteria | bacteria | species | 807 | click here |
| bartonella grahamii | Yes | species | bacteria | bacteria | species | 33045 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| bartonella kosoyi | Yes | species | | | species | 2133959 | click here |
| bartonella phoceensis | Yes | species | bacteria | bacteria | species | 270249 | click here |
| bartonella queenslandensis | No | species | bacteria | bacteria | species | 481138 | click here |
| bartonella queenslandensis | Yes | species | bacteria | bacteria | species | 481138 | click here |
| bartonella rattaustraliani | Yes | species | bacteria | bacteria | species | 481139 | click here |
| bartonella rattimassiliensis | Yes | species | bacteria | bacteria | species | 270250 | click here |
| bartonella rochalimae | Yes | species | bacteria | bacteria | species | 395923 | click here |
| bartonella sp. | Yes | species | bacteria | bacteria | species | 46358 | click here |
| bartonella sp. 1-1c | Yes | no rank | bacteria | bacteria | species | 515256 | click here |
| bartonella sp. akusekito 1-1 | Yes | no rank | bacteria | bacteria | species | 685460 | click here |
| bartonella sp. amami 5-1 | Yes | no rank | bacteria | bacteria | species | 685469 | click here |
| bartonella sp. b28297 | Yes | no rank | | | species | 1563549 | click here |
| bartonella sp. bcv64 | Yes | no rank | | | species | 1623445 | click here |