| acaulium album | No | species | | | species | 2020668 | click here |
| adeno-associated dependoparvovirus b | Yes | species | | | species | 1511892 | click here |
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| anystina sp. ns-2016 | Yes | no rank | | | species | 1855840 | click here |
| arctic ground squirrel hepatitis b virus | Yes | no rank | viruses and viroids | viruses | no rank | 41952 | click here |
| arthrobacter sp. | No | species | bacteria | bacteria | species | 1667 | click here |
| aspergillus caesiellus | No | species | eukaryota | plants | species | 41960 | click here |
| aspergillus jensenii | No | species | | | species | 1220206 | click here |
| aspergillus ostianus | No | species | eukaryota | plants | species | 138279 | click here |
| aspergillus ruber | No | species | eukaryota | plants | species | 396024 | click here |
| aspergillus sydowii | No | species | eukaryota | plants | species | 75750 | click here |
| aspergillus tonophilus | No | species | | | species | 1697446 | click here |
| aspergillus versicolor | No | species | eukaryota | plants | species | 46472 | click here |
| bartonella sp. | Yes | species | bacteria | bacteria | species | 46358 | click here |
| baylisascaris procyonis | Yes | species | eukaryota | invertebrates | species | 6259 | click here |
| borreliella burgdorferi | Yes | species | bacteria | bacteria | species | 139 | click here |
| candida albicans | No | species | eukaryota | plants | species | 5476 | click here |
| canine distemper virus | Yes | species | viruses and viroids | viruses | species | 11232 | click here |
| capillaria hepatica | Yes | species | | | species | 1239592 | click here |
| chaetomium subaffine | No | species | | | species | 1036253 | click here |
| colorado tick fever virus | Yes | species | viruses and viroids | viruses | species | 46839 | click here |
| cryptosporidium rubeyi | Yes | species | | | species | 1761662 | click here |
| cryptosporidium sp. cervine genotype | Yes | no rank | eukaryota | invertebrates | species | 571951 | click here |
| cryptosporidium sp. ex marmota flaviventris | Yes | no rank | | | species | 1431118 | click here |
| cryptosporidium sp. ground squirrel genotype ii | Yes | no rank | | | species | 1759702 | click here |
| cryptosporidium sp. sltl05c | Yes | no rank | eukaryota | invertebrates | species | 359985 | click here |
| cryptosporidium ubiquitum | Yes | species | eukaryota | invertebrates | species | 857276 | click here |
| ctenotaenia marmotae | Yes | species | eukaryota | invertebrates | species | 268231 | click here |
| deer tick virus | Yes | no rank | viruses and viroids | viruses | no rank | 58535 | click here |
| dicrocoelium dendriticum | Yes | species | eukaryota | invertebrates | species | 57078 | click here |
| eastern equine encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11021 | click here |
| encephalomyocarditis virus | Yes | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| enterococcus faecium | No | species | bacteria | bacteria | species | 1352 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| escherichia marmotae | Yes | species | | | species | 1499973 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| giardia intestinalis assemblage e | Yes | no rank | | | no rank | 1394985 | click here |
| ground squirrel hepatitis virus | Yes | species | viruses and viroids | viruses | species | 10406 | click here |
| hantaan orthohantavirus | Yes | species | | | species | 1980471 | click here |
| helicobacter himalayensis | No | species | | | species | 1591088 | click here |
| helicobacter marmotae | Yes | species | bacteria | bacteria | species | 152490 | click here |
| hepatitis b virus | Yes | species | viruses and viroids | viruses | species | 10407 | click here |
| hepatitis delta virus | Yes | species | viruses and viroids | viruses | species | 12475 | click here |
| hepatovirus a | Yes | species | viruses and viroids | viruses | species | 12092 | click here |
| hepatozoon sp. ex marmota monax kea-2011 | Yes | no rank | | | species | 1080281 | click here |
| himalayan marmot bocaparvovirus 1 | Yes | species | | | species | 2059413 | click here |
| himalayan marmot bocaparvovirus 2 | Yes | species | | | species | 2059415 | click here |
| la crosse orthobunyavirus | Yes | species | | | species | 2560547 | click here |
| la crosse virus | Yes | no rank | viruses and viroids | viruses | no rank | 11577 | click here |
| lactobacillus reuteri | No | species | bacteria | bacteria | species | 1598 | click here |
| lactobacillus sp. | No | species | bacteria | bacteria | species | 1591 | click here |
| lactobacillus sp. ht06-2 | No | no rank | | | species | 2080222 | click here |
| lactobacillus sp. ht111-2 | Yes | no rank | | | species | 2495899 | click here |
| lactobacillus sp. ht170-2 | Yes | no rank | | | species | 2495900 | click here |
| linognathoides marmotae | No | species | eukaryota | invertebrates | species | 160147 | click here |
| linognathoides marmotae | Yes | species | eukaryota | invertebrates | species | 160147 | click here |
| listeria ivanovii | Yes | species | bacteria | bacteria | species | 1638 | click here |
| macrocanthorhynchus catalinum | Yes | species | | | species | | click here |
| mamastrovirus sp. | Yes | species | | | species | 1912147 | click here |
| marmot associated genomovirus 1 | Yes | species | | | species | 2716343 | click here |
| marmot associated genomovirus 2 | Yes | species | | | species | 2716344 | click here |
| marmot associated genomovirus 3 | Yes | species | | | species | 2716345 | click here |
| marmot associated genomovirus 4 | Yes | species | | | species | 2716346 | click here |
| marmot associated torque teno virus | Yes | species | | | species | 2716347 | click here |
| marmot astrovirus 1 | Yes | species | | | species | 2161797 | click here |
| marmot astrovirus 2 | Yes | species | | | species | 2161798 | click here |
| marmot astrovirus 3 | Yes | species | | | species | 2161799 | click here |
| marmot astrovirus 4 | Yes | species | | | species | 2161800 | click here |
| marmot astrovirus 5 | Yes | species | | | species | 2161801 | click here |
| marmot astrovirus 6 | Yes | species | | | species | 2161802 | click here |
| marmot cardiovirus | Yes | species | | | species | 2161811 | click here |
| marmot kobuvirus | Yes | species | | | species | 2161810 | click here |
| marmot mosavirus | Yes | species | | | species | 2161809 | click here |
| marmot norovirus | Yes | species | | | species | 2161807 | click here |
| marmot picobirnavirus | Yes | species | | | species | 2161795 | click here |
| marmot sapelovirus 1 | Yes | species | | | species | 2161803 | click here |
| marmot sapelovirus 2 | Yes | species | | | species | 2161804 | click here |
| marmot sapovirus | Yes | species | | | species | 2161805 | click here |
| marmota monax | Yes | species | eukaryota | rodents | species | 9995 | click here |
| marmota sibirica | Yes | species | eukaryota | rodents | species | 93166 | click here |
| memnoniella echinata | No | species | eukaryota | plants | species | 80383 | click here |
| monkeypox virus | Yes | species | viruses and viroids | viruses | species | 10244 | click here |
| moraxella sp. | No | species | bacteria | bacteria | species | 479 | click here |
| mucor racemosus | No | species | eukaryota | plants | species | 4841 | click here |
| murine leukemia virus | Yes | species | viruses and viroids | viruses | species | 11786 | click here |
| neisseria sp. | No | species | bacteria | bacteria | species | 192066 | click here |
| ochlerotatus triseriatus | Yes | species | eukaryota | invertebrates | species | 7162 | click here |
| ornithodoros huajianensis | Yes | species | | | species | 2590052 | click here |
| oropsylla silantiewi | No | species | | | species | 1461318 | click here |
| penicillium allii-sativi | No | species | | | species | 1304711 | click here |
| penicillium brevicompactum | No | species | eukaryota | plants | species | 5074 | click here |
| penicillium chrysogenum | No | species | eukaryota | plants | species | 5076 | click here |
| penicillium citrinum | No | species | eukaryota | plants | species | 5077 | click here |
| penicillium echinulatum | No | species | eukaryota | plants | species | 60174 | click here |
| penicillium hispanicum | No | species | | | species | 1080232 | click here |
| penicillium paneum | No | species | eukaryota | plants | species | 68879 | click here |
| penicillium polonicum | No | species | eukaryota | plants | species | 60169 | click here |
| penicillium roqueforti | No | species | eukaryota | plants | species | 5082 | click here |