| acholeplasma laidlawii | No | species | bacteria | bacteria | species | 2148 | click here |
| anaplasma marginale | No | species | bacteria | bacteria | species | 770 | click here |
| anaplasma ovis | No | species | bacteria | bacteria | species | 142058 | click here |
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| anaplasma sp. hlj-14 | No | no rank | | | species | 1562740 | click here |
| babesia capreoli | No | species | eukaryota | invertebrates | species | 308426 | click here |
| babesia divergens | No | species | eukaryota | invertebrates | species | 32595 | click here |
| babesia ovis | No | species | eukaryota | invertebrates | species | 5869 | click here |
| batai virus | No | no rank | viruses and viroids | viruses | no rank | 80942 | click here |
| bifidobacterium animalis subsp. lactis | No | subspecies | bacteria | bacteria | subspecies | 302911 | click here |
| bifidobacterium pseudolongum subsp. globosum | No | subspecies | bacteria | bacteria | subspecies | 1690 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| border disease virus | No | species | viruses and viroids | viruses | species | 358764 | click here |
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here |
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here |
| bovine herpesvirus 5 | No | species | viruses and viroids | viruses | species | 35244 | click here |
| bovine viral diarrhea virus 1 | No | species | viruses and viroids | viruses | species | 11099 | click here |
| brucella abortus | No | species | bacteria | bacteria | species | 235 | click here |
| brucella ovis | No | species | bacteria | bacteria | species | 236 | click here |
| cache valley virus | No | no rank | viruses and viroids | viruses | no rank | 80935 | click here |
| california encephalitis virus | No | no rank | viruses and viroids | viruses | no rank | 35305 | click here |
| camelostrongylus mentulatus | No | species | eukaryota | invertebrates | species | 53334 | click here |
| caprine arthritis encephalitis virus | No | species | viruses and viroids | viruses | species | 11660 | click here |
| chlamydia abortus | No | species | bacteria | bacteria | species | 83555 | click here |
| chlamydia psittaci | No | species | bacteria | bacteria | species | 83554 | click here |
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here |
| cryptococcus neoformans | No | species | eukaryota | plants | species | 5207 | click here |
| cryptosporidium muris | No | species | eukaryota | invertebrates | species | 5808 | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. b2-6 | No | no rank | eukaryota | invertebrates | species | 229484 | click here |
| cystocaulus ocreatus | No | species | eukaryota | invertebrates | species | 473975 | click here |
| dichelobacter nodosus | No | species | bacteria | bacteria | species | 870 | click here |
| dicrocoelium dendriticum | No | species | eukaryota | invertebrates | species | 57078 | click here |
| dicrocoelium hospes | No | species | eukaryota | invertebrates | species | 227982 | click here |
| dictyocaulus filaria | No | species | eukaryota | invertebrates | species | 44603 | click here |
| echinococcus granulosus | No | species | eukaryota | invertebrates | species | 6210 | click here |
| eimeria ahsata | No | species | eukaryota | invertebrates | species | 155206 | click here |
| eimeria crandallis | No | species | eukaryota | invertebrates | species | 42768 | click here |
| eimeria faurei | No | species | eukaryota | invertebrates | species | 156219 | click here |
| eimeria intricata | No | species | | | species | | click here |
| eimeria ninakohlyakimovae | No | species | | | species | 1871630 | click here |
| eimeria ovina | No | species | | | species | | click here |
| eimeria ovinoidalis | No | species | eukaryota | invertebrates | species | 42767 | click here |
| eimeria parva | No | species | | | species | | click here |
| erysipelothrix rhusiopathiae | No | species | bacteria | bacteria | species | 1648 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| exogenous jaagsiekte sheep retrovirus | No | no rank | viruses and viroids | viruses | no rank | 47898 | click here |
| fasciola hepatica | No | species | eukaryota | invertebrates | species | 6192 | click here |
| foot-and-mouth disease virus | No | species | viruses and viroids | viruses | species | 12110 | click here |
| francisella tularensis | No | species | bacteria | bacteria | species | 263 | click here |
| genomoviridae sp. | No | species | | | species | 2202565 | click here |
| gongylonema nepalensis | No | species | | | species | 1775964 | click here |
| haemonchus contortus | No | species | eukaryota | invertebrates | species | 6289 | click here |
| jaagsiekte sheep retrovirus | No | species | viruses and viroids | viruses | species | 11746 | click here |
| jamestown canyon virus | No | no rank | viruses and viroids | viruses | no rank | 35511 | click here |
| klebsiella pneumoniae | No | species | bacteria | bacteria | species | 573 | click here |
| marshallagia marshalli | No | species | eukaryota | invertebrates | species | 106947 | click here |
| moniezia expansa | No | species | eukaryota | invertebrates | species | 28841 | click here |
| muellerius capillaris | No | species | eukaryota | invertebrates | species | 242453 | click here |
| mycobacterium avium | No | species | bacteria | bacteria | species | 1764 | click here |
| mycobacterium avium subsp. paratuberculosis | No | subspecies | bacteria | bacteria | subspecies | 1770 | click here |
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here |
| mycoplasma capricolum | No | species | bacteria | bacteria | species | 2095 | click here |
| mycoplasma capricolum subsp. capripneumoniae | No | subspecies | bacteria | bacteria | subspecies | 40480 | click here |
| mycoplasma conjunctivae | No | species | bacteria | bacteria | species | 45361 | click here |
| nematodirus filicollis | No | species | eukaryota | invertebrates | species | 61840 | click here |
| neospora caninum | No | species | eukaryota | invertebrates | species | 29176 | click here |
| orthohepevirus a | No | species | | | species | 1678143 | click here |
| ostertagia ostertagi | No | species | eukaryota | invertebrates | species | 6317 | click here |
| ovine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 10398 | click here |
| pasteurella multocida | No | species | bacteria | bacteria | species | 747 | click here |
| porcine circovirus 3 | No | species | | | species | 1868221 | click here |
| protostrongylus hobmaieri | No | species | | | species | 1418101 | click here |
| protostrongylus rufescens | No | species | eukaryota | invertebrates | species | 321386 | click here |
| protostrongylus stilesi | No | species | eukaryota | invertebrates | species | 473978 | click here |
| respiratory syncytial virus | No | species | viruses and viroids | viruses | species | 12814 | click here |
| sarcocystis tenella | No | species | eukaryota | invertebrates | species | 5818 | click here |
| sarcoptes scabiei | No | species | eukaryota | invertebrates | species | 52283 | click here |
| schmallenberg virus | No | species | viruses and viroids | viruses | no rank | 1133363 | click here |
| small ruminant lentivirus | No | no rank | viruses and viroids | viruses | no rank | 254355 | click here |
| spiculopteragia boehmi | No | species | eukaryota | invertebrates | species | 239091 | click here |
| staphylococcus aureus | No | species | bacteria | bacteria | species | 1280 | click here |
| taenia multiceps | No | species | eukaryota | invertebrates | species | 94034 | click here |
| teladorsagia circumcincta | No | species | eukaryota | invertebrates | species | 45464 | click here |
| teladorsagia trifurcata | No | species | | | species | 1213752 | click here |
| theileria sp. | No | species | eukaryota | invertebrates | species | 27992 | click here |
| tick-borne encephalitis virus | No | species | viruses and viroids | viruses | species | 11084 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| trichostrongylus axei | No | species | eukaryota | invertebrates | species | 40349 | click here |
| trichostrongylus colubriformis | No | species | eukaryota | invertebrates | species | 6319 | click here |
| trichostrongylus skrjabini | No | species | | | species | | click here |
| trichostrongylus vitrinus | No | species | eukaryota | invertebrates | species | 40352 | click here |
| trichuris discolor | No | species | eukaryota | invertebrates | species | 483153 | click here |
| trichuris ovis | No | species | eukaryota | invertebrates | species | 93034 | click here |
| west nile virus | No | species | viruses and viroids | viruses | species | 11082 | click here |
| yersinia enterocolitica | No | species | bacteria | bacteria | species | 630 | click here |