| akabane virus | No | species | viruses and viroids | viruses | species | 70566 | click here |
| alcelaphine herpesvirus 2 | No | species | viruses and viroids | viruses | species | 138184 | click here |
| anaplasma centrale | No | species | bacteria | bacteria | species | 769 | click here |
| anaplasma marginale | No | species | bacteria | bacteria | species | 770 | click here |
| anaplasma platys | No | species | bacteria | bacteria | species | 949 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| borrelia theileri | No | species | bacteria | bacteria | species | 43082 | click here |
| bovine ephemeral fever virus | No | species | viruses and viroids | viruses | species | 11303 | click here |
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here |
| bovine parainfluenza virus 3 | No | species | viruses and viroids | viruses | species | 11215 | click here |
| bovine respiratory syncytial virus | No | species | viruses and viroids | viruses | species | 11246 | click here |
| bovine rotavirus | No | no rank | viruses and viroids | viruses | no rank | 10927 | click here |
| bovine viral diarrhea virus 1 | No | species | viruses and viroids | viruses | species | 11099 | click here |
| brucella melitensis | No | species | bacteria | bacteria | species | 29459 | click here |
| clostridium perfringens | No | species | bacteria | bacteria | species | 1502 | click here |
| cooperia fuelleborni | No | species | | invertebrates | species | 1701394 | click here |
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here |
| crimean-congo hemorrhagic fever orthonairovirus | No | species | | | species | 1980519 | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium ubiquitum | No | species | eukaryota | invertebrates | species | 857276 | click here |
| culicoides bolitinos | No | species | eukaryota | invertebrates | species | 88588 | click here |
| culicoides imicola | No | species | eukaryota | invertebrates | species | 88399 | click here |
| culicoides leucostictus | No | species | | | species | 1494412 | click here |
| culicoides magnus | No | species | | | species | 1576545 | click here |
| culicoides pycnostictus | No | species | | | species | 2518572 | click here |
| culicoides similis | No | species | | | species | 1869288 | click here |
| cyathostominae sp. ex impala vo-2016 | No | no rank | | | species | 1784984 | click here |
| dasytricha ruminantium | No | species | eukaryota | invertebrates | species | 40806 | click here |
| ehrlichia ruminantium | No | species | bacteria | bacteria | species | 779 | click here |
| eimeria impalae | No | species | | | species | | click here |
| eimeria neitzi | No | species | | | species | | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| fasciola gigantica | No | species | eukaryota | invertebrates | species | 46835 | click here |
| fasciola hepatica | No | species | eukaryota | invertebrates | species | 6192 | click here |
| foot-and-mouth disease virus | No | species | viruses and viroids | viruses | species | 12110 | click here |
| foot-and-mouth disease virus sat 1 | No | no rank | viruses and viroids | viruses | no rank | 12122 | click here |
| foot-and-mouth disease virus sat 2 | No | no rank | viruses and viroids | viruses | no rank | 35292 | click here |
| gongylonema pulchrum | No | species | eukaryota | invertebrates | species | 637853 | click here |
| haemonchus contortus | No | species | eukaryota | invertebrates | species | 6289 | click here |
| haemonchus krugeri | No | species | | | species | | click here |
| haemonchus placei | No | species | eukaryota | invertebrates | species | 6290 | click here |
| impala herpesvirus 1 | No | species | viruses and viroids | viruses | species | 299474 | click here |
| lumpy skin disease virus | No | species | viruses and viroids | viruses | species | 59509 | click here |
| mycobacterium intracellulare | No | species | bacteria | bacteria | species | 1767 | click here |
| mycobacterium parascrofulaceum | No | species | bacteria | bacteria | species | 240125 | click here |
| nairobi sheep disease virus | No | no rank | viruses and viroids | viruses | no rank | 194540 | click here |
| oesophagostomum columbianum | No | species | eukaryota | invertebrates | species | 85896 | click here |
| peste des petits ruminants virus | No | no rank | | | no rank | 2593991 | click here |
| pilobolus crystallinus | No | species | eukaryota | plants | species | 369761 | click here |
| rhipicephalus evertsi evertsi | No | subspecies | eukaryota | invertebrates | subspecies | 72864 | click here |
| rift valley fever phlebovirus | No | species | | | species | 1933187 | click here |
| rift valley fever phlebovirus | Yes | species | | | species | 1933187 | click here |
| rinderpest virus | No | species | viruses and viroids | viruses | species | 11241 | click here |
| shigella sonnei | No | species | bacteria | bacteria | species | 624 | click here |
| taenia hyenae | No | species | | | species | | click here |
| theileria sp. | No | species | eukaryota | invertebrates | species | 27992 | click here |
| trichostrongylus axei | No | species | eukaryota | invertebrates | species | 40349 | click here |