| anaplasma centrale | No | species | bacteria | bacteria | species | 769 | click here |
| anaplasma marginale | No | species | bacteria | bacteria | species | 770 | click here |
| babesia divergens | No | species | eukaryota | invertebrates | species | 32595 | click here |
| babesia odocoilei | No | species | eukaryota | invertebrates | species | 36766 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here |
| bovine spongiform encephalopathy agent | No | species | | | species | | click here |
| cephenemyia apicata | No | species | | | species | | click here |
| cephenemyia jellisoni | No | species | | | species | 1640936 | click here |
| cephenemyia pratti | No | species | | | species | | click here |
| cervid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 79891 | click here |
| chronic wasting disease | No | species | | | | | click here |
| dermacentor albipictus | No | species | eukaryota | invertebrates | species | 60249 | click here |
| dicrocoelium dendriticum | No | species | eukaryota | invertebrates | species | 57078 | click here |
| dictyocaulus viviparus | No | species | eukaryota | invertebrates | species | 29172 | click here |
| elaeophora schneideri | No | species | | | species | 1769799 | click here |
| elaphostrongylus cervi | No | species | eukaryota | invertebrates | species | 192625 | click here |
| epizootic hemorrhagic disease virus | No | species | viruses and viroids | viruses | species | 40054 | click here |
| fasciola hepatica | No | species | eukaryota | invertebrates | species | 6192 | click here |
| fascioloides magna | No | species | eukaryota | invertebrates | species | 394415 | click here |
| jamestown canyon virus | No | no rank | viruses and viroids | viruses | no rank | 35511 | click here |
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here |
| mycobacterium tuberculosis | No | species | bacteria | bacteria | species | 1773 | click here |
| parelaphostrongylus tenuis | No | species | eukaryota | invertebrates | species | 148309 | click here |
| psoroptes cervinus | No | species | eukaryota | invertebrates | species | 129835 | click here |
| respiratory syncytial virus | No | species | viruses and viroids | viruses | species | 12814 | click here |
| setaria altaica | No | species | | | species | | click here |
| setaria tundra | No | species | eukaryota | invertebrates | species | 221943 | click here |
| theileria cervi | No | species | eukaryota | invertebrates | species | 72148 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| trypanosoma cervi | No | species | | | species | 1321767 | click here |
| trypanosoma cf. cervi pjh-2013 | No | no rank | | | species | 1306404 | click here |
| trypanosoma sp. pjh-2013b | No | no rank | | | species | 1323427 | click here |
| trypanosoma sp. pjh-2013c | No | no rank | | | species | 1323428 | click here |
| trypanosoma theileri | No | species | eukaryota | invertebrates | species | 67003 | click here |
| uncultured neocallimastigales | No | no rank | eukaryota | environmental samples | species | 325898 | click here |