| alcelaphine herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 35252 | click here |
| axis porcinus gammaherpesvirus 1 | Yes | species | | | species | 2716967 | click here |
| bacterium | Yes | no rank | | | species | 1869227 | click here |
| bluetongue virus | Yes | species | viruses and viroids | viruses | species | 40051 | click here |
| borreliella burgdorferi | Yes | species | bacteria | bacteria | species | 139 | click here |
| brucella abortus | Yes | species | bacteria | bacteria | species | 235 | click here |
| cooperia punctata | Yes | species | eukaryota | invertebrates | species | 96640 | click here |
| coxiella burnetii | Yes | species | bacteria | bacteria | species | 777 | click here |
| cystofilobasidium macerans | Yes | species | eukaryota | plants | species | 89926 | click here |
| eimeria crandallis | Yes | species | eukaryota | invertebrates | species | 42768 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| epizootic hemorrhagic disease virus | Yes | species | viruses and viroids | viruses | species | 40054 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| fasciola gigantica | Yes | species | eukaryota | invertebrates | species | 46835 | click here |
| foot-and-mouth disease virus | Yes | species | viruses and viroids | viruses | species | 12110 | click here |
| foot-and-mouth disease virus o | Yes | no rank | viruses and viroids | viruses | no rank | 12118 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| gongylonema pulchrum | Yes | species | eukaryota | invertebrates | species | 637853 | click here |
| haemonchus contortus | Yes | species | eukaryota | invertebrates | species | 6289 | click here |
| muellerius capillaris | Yes | species | eukaryota | invertebrates | species | 242453 | click here |
| mycobacterium avium subsp. paratuberculosis | Yes | subspecies | bacteria | bacteria | subspecies | 1770 | click here |
| mycobacterium bovis | Yes | species | bacteria | bacteria | species | 1765 | click here |
| mycobacterium tuberculosis | Yes | species | bacteria | bacteria | species | 1773 | click here |
| neocallimastix sp. af-cts-can1 | Yes | no rank | eukaryota | plants | species | 579079 | click here |
| neospora caninum | Yes | species | eukaryota | invertebrates | species | 29176 | click here |
| pasteurella multocida | Yes | species | bacteria | bacteria | species | 747 | click here |
| piromyces sp. af-cts-cap1 | Yes | no rank | eukaryota | plants | species | 579095 | click here |
| rabies virus | Yes | species | viruses and viroids | viruses | species | 11292 | click here |
| streptococcus lutetiensis | Yes | species | bacteria | bacteria | species | 150055 | click here |
| theileria cervi | Yes | species | eukaryota | invertebrates | species | 72148 | click here |
| theileria sp. rmp-2013 | Yes | no rank | | | species | 1291200 | click here |
| trichostrongylus axei | Yes | species | eukaryota | invertebrates | species | 40349 | click here |
| trypanosoma evansi | Yes | species | eukaryota | invertebrates | species | 5697 | click here |
| uncultured neocallimastigales | Yes | no rank | eukaryota | environmental samples | species | 325898 | click here |
| yersinia pseudotuberculosis | Yes | species | bacteria | bacteria | species | 633 | click here |