| babesia bigemina | No | species | eukaryota | invertebrates | species | 5866 | click here |
| bifidobacterium pseudolongum subsp. globosum | No | subspecies | bacteria | bacteria | subspecies | 1690 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| bluetongue virus 11 | No | no rank | viruses and viroids | viruses | no rank | 35329 | click here |
| borna disease virus 1 | No | no rank | | | no rank | 1714621 | click here |
| bovine adenovirus 3 | No | no rank | viruses and viroids | viruses | no rank | 10510 | click here |
| bovine herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10320 | click here |
| bovine parainfluenza virus 3 | No | species | viruses and viroids | viruses | species | 11215 | click here |
| bovine viral diarrhea virus 1 | No | species | viruses and viroids | viruses | species | 11099 | click here |
| brucella abortus | No | species | bacteria | bacteria | species | 235 | click here |
| brucella abortus 94-1313 | No | no rank | | | no rank | 1328354 | click here |
| calicophoron daubneyi | No | species | eukaryota | invertebrates | species | 300641 | click here |
| camelostrongylus mentulatus | No | species | eukaryota | invertebrates | species | 53334 | click here |
| candidatus mycoplasma haemolamae | No | species | bacteria | bacteria | species | 141391 | click here |
| chorioptes bovis | No | species | eukaryota | invertebrates | species | 420257 | click here |
| clostridium perfringens | No | species | bacteria | bacteria | species | 1502 | click here |
| coccidioides posadasii | No | species | eukaryota | plants | species | 199306 | click here |
| corynebacterium pseudotuberculosis 267 | No | | | | no rank | 1089446 | click here |
| cowpox virus | No | species | viruses and viroids | viruses | species | 10243 | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| deinococcus proteolyticus | No | species | bacteria | bacteria | species | 55148 | click here |
| deinococcus proteolyticus mrp | No | no rank | bacteria | bacteria | no rank | 693977 | click here |
| echinococcus granulosus | No | species | eukaryota | invertebrates | species | 6210 | click here |
| ehrlichia sp. 'lge agent' | No | no rank | bacteria | bacteria | species | 129190 | click here |
| eimeria alpacae | No | species | | | species | | click here |
| eimeria lamae | No | species | eukaryota | invertebrates | species | 703585 | click here |
| eimeria macusaniensis | No | species | eukaryota | invertebrates | species | 745318 | click here |
| eimeria peruviana | No | species | | | species | | click here |
| eimeria punoensis | No | species | | | species | | click here |
| enterocytozoon bieneusi | No | species | eukaryota | plants | species | 31281 | click here |
| enterovirus e | No | species | viruses and viroids | viruses | species | 12064 | click here |
| equid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10326 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| faeces associated gemycircularvirus 20 | No | no rank | | | no rank | 1843740 | click here |
| faeces associated gemycircularvirus 21 | No | no rank | | | no rank | 1843741 | click here |
| fascioloides magna | No | species | eukaryota | invertebrates | species | 394415 | click here |
| foot-and-mouth disease virus | No | species | viruses and viroids | viruses | species | 12110 | click here |
| haemonchus contortus | No | species | eukaryota | invertebrates | species | 6289 | click here |
| heterobilharzia americana | No | species | eukaryota | invertebrates | species | 39320 | click here |
| lactobacillus salivarius | No | species | bacteria | bacteria | species | 1624 | click here |
| llama faeces associated circular dna virus-1 | No | no rank | | | species | 1843771 | click here |
| macrococcus brunensis | No | species | bacteria | bacteria | species | 198483 | click here |
| macrococcus hajekii | No | species | bacteria | bacteria | species | 198482 | click here |
| macrococcus lamae | No | species | bacteria | bacteria | species | 198484 | click here |
| mammalian orthoreovirus 1 | No | no rank | viruses and viroids | viruses | no rank | 538120 | click here |
| methanobrevibacter sp. | No | no rank | archaea | bacteria | species | 66852 | click here |
| microthoracius mazzai | No | species | | | species | | click here |
| microthoracius minor | No | species | | | species | | click here |
| microthoracius praelongiceps | No | species | | | species | | click here |
| middle east respiratory syndrome coronavirus | No | species | viruses and viroids | viruses | species | 1335626 | click here |
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here |
| nematodirus battus | No | species | eukaryota | invertebrates | species | 28839 | click here |
| parelaphostrongylus tenuis | No | species | eukaryota | invertebrates | species | 148309 | click here |
| pseudobutyrivibrio ruminis | No | species | bacteria | bacteria | species | 46206 | click here |
| pseudobutyrivibrio sp. inlla15 | No | no rank | | | species | 1429749 | click here |
| pseudobutyrivibrio sp. inlla2 | No | no rank | | | species | 1429750 | click here |
| pseudobutyrivibrio sp. inlla20 | No | no rank | | | species | 1429751 | click here |
| pseudobutyrivibrio sp. inlla6 | No | no rank | | | species | 1429752 | click here |
| rabies virus | No | species | viruses and viroids | viruses | species | 11292 | click here |
| rotavirus a | No | species | viruses and viroids | viruses | species | 28875 | click here |
| salmonella enterica subsp. enterica serovar typhimurium | No | no rank | bacteria | bacteria | no rank | 90371 | click here |
| sarcocystis aucheniae | No | species | eukaryota | invertebrates | species | 65407 | click here |
| sarcocystis masoni | No | species | | | species | 1811857 | click here |
| spiculopteragia peruviana | No | species | | | species | | click here |
| taenia saginata | No | species | eukaryota | invertebrates | species | 6206 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| trichophyton verrucosum | No | species | eukaryota | plants | species | 63417 | click here |
| trichostrongylus axei | No | species | eukaryota | invertebrates | species | 40349 | click here |
| uncultured archaeon | No | no rank | archaea | environmental samples | species | 115547 | click here |
| uncultured bacterium | No | no rank | bacteria | environmental samples | species | 77133 | click here |
| uncultured blastocystis | No | no rank | eukaryota | environmental samples | species | 444509 | click here |
| uncultured neocallimastigales | No | no rank | eukaryota | environmental samples | species | 325898 | click here |
| vesicular stomatitis indiana virus | No | species | viruses and viroids | viruses | species | 11277 | click here |