| african horse sickness virus | No | species | viruses and viroids | viruses | species | 40050 | click here |
| akabane virus | No | species | viruses and viroids | viruses | species | 70566 | click here |
| anoplocephala perfoliata | No | species | eukaryota | invertebrates | species | 218192 | click here |
| bacillus anthracis | No | species | bacteria | bacteria | species | 1392 | click here |
| blastocystis hominis | No | species | eukaryota | plants | species | 12968 | click here |
| bovine papillomavirus | No | species | viruses and viroids | viruses | species | 10571 | click here |
| bovine papillomavirus | Yes | species | viruses and viroids | viruses | species | 10571 | click here |
| clostridioides difficile | No | species | bacteria | bacteria | species | 1496 | click here |
| craterostomum acuticaudatum | No | species | eukaryota | invertebrates | species | 74591 | click here |
| craterostomum acuticaudatum | Yes | species | eukaryota | invertebrates | species | 74591 | click here |
| crimean-congo hemorrhagic fever orthonairovirus | No | species | | | species | 1980519 | click here |
| cyathostomum tetracanthum | No | species | eukaryota | invertebrates | species | 475190 | click here |
| cyathostomum tetracanthum | Yes | species | eukaryota | invertebrates | species | 475190 | click here |
| cylicocyclus auriculatus | No | species | eukaryota | invertebrates | species | 71428 | click here |
| cylicocyclus auriculatus | Yes | species | eukaryota | invertebrates | species | 71428 | click here |
| cylicocyclus leptostomus | No | species | eukaryota | invertebrates | species | 53997 | click here |
| cylicocyclus radiatus | Yes | species | eukaryota | invertebrates | species | 71430 | click here |
| cylicostephanus bidentatus | No | species | eukaryota | invertebrates | species | 71461 | click here |
| cylicostephanus calicatus | No | species | eukaryota | invertebrates | species | 71464 | click here |
| cylicostephanus calicatus | Yes | species | eukaryota | invertebrates | species | 71464 | click here |
| cylicostephanus minutus | No | species | eukaryota | invertebrates | species | 71467 | click here |
| echinococcus equinus | No | species | eukaryota | invertebrates | species | 519353 | click here |
| echinococcus granulosus | No | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus granulosus | Yes | species | eukaryota | invertebrates | species | 6210 | click here |
| enterococcus faecium | No | species | bacteria | bacteria | species | 1352 | click here |
| equid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10326 | click here |
| equid herpesvirus 4 | No | species | viruses and viroids | viruses | species | 10331 | click here |
| equid herpesvirus 9 | No | species | viruses and viroids | viruses | species | 55744 | click here |
| equid herpesvirus 9 | Yes | species | viruses and viroids | viruses | species | 55744 | click here |
| equine arteritis virus | No | species | viruses and viroids | viruses | species | 11047 | click here |
| equine encephalosis virus | No | species | viruses and viroids | viruses | species | 201490 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| habronema majus | No | species | | | species | 1973058 | click here |
| heterobilharzia americana | Yes | species | eukaryota | invertebrates | species | 39320 | click here |
| parascaris equorum | No | species | eukaryota | invertebrates | species | 6256 | click here |
| poteriostomum ratzii | No | species | eukaryota | invertebrates | species | 53999 | click here |
| rift valley fever phlebovirus | No | species | | | species | 1933187 | click here |
| sarcocystis neurona | No | species | eukaryota | invertebrates | species | 42890 | click here |
| staphylococcus aureus | No | species | bacteria | bacteria | species | 1280 | click here |
| streptococcus equi | No | species | bacteria | bacteria | species | 1336 | click here |
| streptococcus equi subsp. ruminatorum | No | subspecies | bacteria | bacteria | subspecies | 254358 | click here |
| strongylus asini | No | species | eukaryota | invertebrates | species | 52887 | click here |
| strongylus asini | Yes | species | eukaryota | invertebrates | species | 52887 | click here |
| strongylus edentatus | No | species | eukaryota | invertebrates | species | 40346 | click here |
| strongylus equinus | No | species | eukaryota | invertebrates | species | 40347 | click here |
| strongylus vulgaris | No | species | eukaryota | invertebrates | species | 40348 | click here |
| theileria equi | No | species | eukaryota | invertebrates | species | 5872 | click here |
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here |
| triodontophorus minor | No | species | | | species | 1735159 | click here |
| triodontophorus minor | Yes | species | | | species | 1735159 | click here |
| trypanosoma brucei | No | species | eukaryota | invertebrates | species | 5691 | click here |
| uncultured ciliate | No | no rank | eukaryota | environmental samples | species | 187299 | click here |
| uncultured neocallimastigales | Yes | no rank | eukaryota | environmental samples | species | 325898 | click here |