| acanthocheilonema spirocauda | Yes | species | nematodes | invertebrates | species | 1285395 | click here |
| anisakis simplex | Yes | species | eukaryota | invertebrates | species | 6269 | click here |
| aquamavirus a | Yes | species | | | species | 1330066 | click here |
| arcanobacterium phocae | Yes | species | bacteria | bacteria | species | 131112 | click here |
| arcanobacterium phocisimile | Yes | species | | | species | 1302235 | click here |
| arcanobacterium sp. | Yes | no rank | bacteria | bacteria | species | 72409 | click here |
| arcanobacterium sp. 2701 | Yes | no rank | | | species | 2722751 | click here |
| arcanobacterium sp. 2710 | Yes | no rank | | | species | 1503041 | click here |
| arthrobacter nasiphocae | Yes | species | bacteria | bacteria | species | 189863 | click here |
| bartonella grahamii | Yes | species | bacteria | bacteria | species | 33045 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| batai orthobunyavirus | Yes | species | | | species | 2560341 | click here |
| batai virus | Yes | no rank | viruses and viroids | viruses | no rank | 80942 | click here |
| bisgaardia genomosp. 1 | Yes | no rank | bacteria | bacteria | species | 880564 | click here |
| bisgaardia hudsonensis | Yes | species | bacteria | bacteria | species | 109472 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| bolbosoma nipponicum | Yes | species | | invertebrates | species | 1167864 | click here |
| bordetella bronchiseptica | Yes | species | bacteria | bacteria | species | 518 | click here |
| brucella abortus | Yes | species | bacteria | bacteria | species | 235 | click here |
| brucella ceti | Yes | species | bacteria | bacteria | species | 120577 | click here |
| brucella pinnipedialis | Yes | species | bacteria | bacteria | species | 120576 | click here |
| brucella sp. 14/95 | Yes | no rank | bacteria | bacteria | species | 437661 | click here |
| brucella sp. 39/94 | Yes | no rank | bacteria | bacteria | species | 437677 | click here |
| brucella sp. 4/96 | Yes | no rank | bacteria | bacteria | species | 437681 | click here |
| brucella sp. 44/94 | Yes | no rank | bacteria | bacteria | species | 437678 | click here |
| brucella sp. 96-408 | Yes | no rank | bacteria | bacteria | species | 114647 | click here |
| brucella sp. f10/99 | Yes | no rank | bacteria | bacteria | species | 437689 | click here |
| brucella sp. f6/99 | Yes | no rank | bacteria | bacteria | species | 437686 | click here |
| brucella sp. f8/99 | Yes | no rank | bacteria | bacteria | species | 437687 | click here |
| brucella sp. f9/99 | Yes | no rank | bacteria | bacteria | species | 437688 | click here |
| brucella sp. m2357/93 | Yes | no rank | bacteria | bacteria | species | 82350 | click here |
| brucella sp. uk13/99 | Yes | no rank | bacteria | bacteria | species | 437683 | click here |
| brucella sp. uk5/01 | Yes | no rank | bacteria | bacteria | species | 437685 | click here |
| brucella suis | Yes | species | bacteria | bacteria | species | 29461 | click here |
| campylobacter helveticus | Yes | species | bacteria | bacteria | species | 28898 | click here |
| campylobacter insulaenigrae | Yes | species | bacteria | bacteria | species | 260714 | click here |
| campylobacter lari subsp. concheus | Yes | subspecies | bacteria | bacteria | subspecies | 488545 | click here |
| campylobacter pinnipediorum subsp. caledonicus | Yes | subspecies | | | subspecies | 1874362 | click here |
| campylobacter upsaliensis | Yes | species | bacteria | bacteria | species | 28080 | click here |
| candida albicans | Yes | species | eukaryota | plants | species | 5476 | click here |
| canine distemper virus | No | species | viruses and viroids | viruses | species | 11232 | click here |
| canine distemper virus | Yes | species | viruses and viroids | viruses | species | 11232 | click here |
| cetacean morbillivirus | Yes | species | viruses and viroids | viruses | species | 36410 | click here |
| cetacean poxvirus 1 | Yes | species | viruses and viroids | viruses | species | 319748 | click here |
| clostridioides difficile | Yes | species | bacteria | bacteria | species | 1496 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| contracaecum cf. osculatum b sm-2008 | Yes | no rank | eukaryota | invertebrates | species | 523425 | click here |
| contracaecum osculatum | Yes | species | eukaryota | invertebrates | species | 106324 | click here |
| corynebacterium phocae | Yes | species | bacteria | bacteria | species | 161895 | click here |
| corynebacterium sp. | Yes | no rank | bacteria | bacteria | species | 1720 | click here |
| corynosoma magdaleni | Yes | species | eukaryota | invertebrates | species | 272946 | click here |
| corynosoma nortmeri | Yes | species | | | species | 2040617 | click here |
| corynosoma strumosum | Yes | species | eukaryota | invertebrates | species | 141827 | click here |
| corynosoma validum | Yes | species | eukaryota | invertebrates | species | 141828 | click here |
| corynosoma villosum | Yes | species | eukaryota | invertebrates | species | 141829 | click here |
| coxiella burnetii | Yes | species | bacteria | bacteria | species | 777 | click here |
| cryptococcus gattii vgi | Yes | species | | | species | 37769 | click here |
| cryptocotyle lingua | Yes | species | eukaryota | invertebrates | species | 66766 | click here |
| cryptosporidium canis | Yes | species | eukaryota | invertebrates | species | 195482 | click here |
| cryptosporidium sp. alb-2011 | Yes | no rank | | | species | 1105349 | click here |
| dictyocaulus viviparus | Yes | species | eukaryota | invertebrates | species | 29172 | click here |
| dioctophyme renale | Yes | species | eukaryota | invertebrates | species | 513045 | click here |
| dipetalonema spirocauda | Yes | species | | | species | | click here |
| diphyllobothrium cordatum | Yes | species | eukaryota | invertebrates | species | 372083 | click here |
| dirofilaria immitis | Yes | species | eukaryota | invertebrates | species | 6287 | click here |
| dolphin morbillivirus | Yes | no rank | viruses and viroids | viruses | no rank | 37131 | click here |
| eastern equine encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11021 | click here |
| echinophthirius horridus | Yes | species | eukaryota | invertebrates | species | 138816 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| erysipelothrix rhusiopathiae | Yes | species | bacteria | bacteria | species | 1648 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| felid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10334 | click here |
| fusarium keratoplasticum | Yes | species | | | species | 1328300 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| h4n5 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 309406 | click here |
| halarachne halichoeri | Yes | species | | | species | 2212830 | click here |
| harbor seal parapoxvirus | Yes | no rank | viruses and viroids | viruses | no rank | 319746 | click here |
| harbor seal parapoxvirus 1 | Yes | no rank | viruses and viroids | viruses | no rank | 358124 | click here |
| harbor seal parapoxvirus 2 | Yes | no rank | viruses and viroids | viruses | no rank | 358125 | click here |
| harbor seal picornavirus | Yes | species | | | species | 2730082 | click here |
| harp seal herpesvirus | Yes | species | | | species | 1419109 | click here |
| helicobacter cetorum | Yes | species | bacteria | bacteria | species | 138563 | click here |
| helicobacter sp. mit 01-5529a | Yes | no rank | bacteria | bacteria | species | 222133 | click here |
| helicobacter sp. mit 01-5529b | Yes | no rank | bacteria | bacteria | species | 222134 | click here |
| hysterothylacium aduncum | Yes | species | eukaryota | invertebrates | species | 118886 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| influenza a virus (a/harbor seal/massachusetts/1/2011(h3n8)) | Yes | no rank | | | no rank | 1136533 | click here |
| influenza a virus (a/harbor seal/new hampshire/179629/2011(h3n8)) | Yes | no rank | | | no rank | 1463641 | click here |
| influenza a virus (a/harbour seal/germany/1/2014(h10n7)) | Yes | no rank | | | no rank | 1572188 | click here |
| influenza a virus (a/seal/mass/1/1980(h7n7)) | Yes | no rank | viruses and viroids | viruses | no rank | 384493 | click here |
| influenza b virus | Yes | species | viruses and viroids | viruses | species | 11520 | click here |
| japanese encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11072 | click here |
| klebsiella pneumoniae | Yes | species | bacteria | bacteria | species | 573 | click here |
| klebsiella pneumoniae subsp. pneumoniae | Yes | subspecies | bacteria | bacteria | subspecies | 72407 | click here |
| leptospira interrogans | Yes | species | bacteria | bacteria | species | 173 | click here |
| listeria ivanovii | Yes | species | bacteria | bacteria | species | 1638 | click here |
| mammalian orthoreovirus 5 | Yes | isolate | | | isolate | 2730540 | click here |
| measles virus | Yes | species | viruses and viroids | viruses | species | 11234 | click here |