| acanthocheilonema reconditum | No | species | eukaryota | invertebrates | species | 114234 | click here |
| adelina sp. 1 bcs-2013 | No | no rank | | | species | 1383553 | click here |
| aelurostrongylus abstrusus | No | species | eukaryota | invertebrates | species | 321389 | click here |
| african horse sickness virus | No | species | viruses and viroids | viruses | species | 40050 | click here |
| alphacoronavirus 1 | No | species | viruses and viroids | viruses | species | 693997 | click here |
| alphatron virus | No | isolate | | | isolate | 2755033 | click here |
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| ancylostoma braziliense | No | species | eukaryota | invertebrates | species | 369059 | click here |
| ancylostoma caninum | No | species | eukaryota | invertebrates | species | 29170 | click here |
| ancylostoma paraduodenale | No | species | | | species | | click here |
| anisakis physeteris | No | species | eukaryota | invertebrates | species | 290545 | click here |
| anisakis simplex | No | species | eukaryota | invertebrates | species | 6269 | click here |
| arcanobacterium phocae | No | species | bacteria | bacteria | species | 131112 | click here |
| arthroderma otae | No | species | eukaryota | plants | species | 63405 | click here |
| babesia bicornis | No | species | eukaryota | invertebrates | species | 176664 | click here |
| babesia bigemina | No | species | eukaryota | invertebrates | species | 5866 | click here |
| babesia felis | No | species | eukaryota | invertebrates | species | 124135 | click here |
| babesia gibsoni | No | species | eukaryota | invertebrates | species | 33632 | click here |
| babesia lengau | No | species | eukaryota | invertebrates | species | 796395 | click here |
| babesia leo | No | species | eukaryota | invertebrates | species | 124136 | click here |
| babesia microti | No | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia sp. | No | species | eukaryota | invertebrates | species | 35084 | click here |
| babesia sp. 1 1093 cl9 | No | no rank | | | species | 1905364 | click here |
| babesia sp. 10 1092 cl9 | No | no rank | | | species | 1905373 | click here |
| babesia sp. 11 1095 | No | no rank | | | species | 1905374 | click here |
| babesia sp. 12 1101 | No | no rank | | | species | 1905375 | click here |
| babesia sp. 2 1092 cl4 | No | no rank | | | species | 1905365 | click here |
| babesia sp. 2 bcs-2013 | No | no rank | | | species | 1383552 | click here |
| babesia sp. 3 1093 cl8 | No | no rank | | | species | 1905366 | click here |
| babesia sp. 4 1093 cl2 | No | no rank | | | species | 1905367 | click here |
| babesia sp. 5 1093 cl7 | No | no rank | | | species | 1905368 | click here |
| babesia sp. 6 1092 cl1 | No | no rank | | | species | 1905369 | click here |
| babesia sp. 7 1092 cl3 | No | no rank | | | species | 1905370 | click here |
| babesia sp. 8 1092 cl5 | No | no rank | | | species | 1905371 | click here |
| babesia sp. 9 1093 cl1 | No | no rank | | | species | 1905372 | click here |
| babesia sp. bcs-2013b | No | no rank | | | species | 1298400 | click here |
| bacillus anthracis | No | species | bacteria | bacteria | species | 1392 | click here |
| bacillus cereus | No | species | bacteria | bacteria | species | 1396 | click here |
| bacillus subtilis | No | species | bacteria | bacteria | species | 1423 | click here |
| bartonella henselae | No | species | bacteria | bacteria | species | 38323 | click here |
| bartonella koehlerae | No | species | bacteria | bacteria | species | 92181 | click here |
| bartonella koehlerae subsp. koehlerae | No | subspecies | | | subspecies | 1819240 | click here |
| bartonella rochalimae | No | species | bacteria | bacteria | species | 395923 | click here |
| bartonella vinsonii | No | species | bacteria | bacteria | species | 33047 | click here |
| blastocystis hominis | No | species | eukaryota | plants | species | 12968 | click here |
| blastocystis sp. | No | species | eukaryota | plants | species | 46767 | click here |
| blastomyces dermatitidis | No | species | eukaryota | plants | species | 5039 | click here |
| bluetongue virus | No | species | viruses and viroids | viruses | species | 40051 | click here |
| bovine calicivirus | No | no rank | viruses and viroids | viruses | no rank | 37300 | click here |
| bovine spongiform encephalopathy agent | No | species | | | species | | click here |
| brucella ceti | No | species | bacteria | bacteria | species | 120577 | click here |
| burkholderia mallei | No | species | bacteria | bacteria | species | 13373 | click here |
| campylobacter insulaenigrae | No | species | bacteria | bacteria | species | 260714 | click here |
| candidatus mycoplasma haemominutum | No | species | bacteria | bacteria | species | 209446 | click here |
| candidatus mycoplasma turicensis | No | species | bacteria | bacteria | species | 346879 | click here |
| canine adenovirus 1 | No | no rank | viruses and viroids | viruses | no rank | 10512 | click here |
| canine calicivirus | No | species | viruses and viroids | viruses | species | 74724 | click here |
| canine distemper virus | No | species | viruses and viroids | viruses | species | 11232 | click here |
| canine distemper virus | Yes | species | viruses and viroids | viruses | species | 11232 | click here |
| canine parvovirus | No | no rank | viruses and viroids | viruses | no rank | 10788 | click here |
| canine parvovirus 2 | No | no rank | viruses and viroids | viruses | no rank | 246878 | click here |
| carnivore protoparvovirus 1 | No | species | | | species | 1511906 | click here |
| cetacean poxvirus 1 | No | species | viruses and viroids | viruses | species | 319748 | click here |
| chlamydia psittaci | No | species | bacteria | bacteria | species | 83554 | click here |
| cladosporium cladosporioides | No | species | eukaryota | plants | species | 29917 | click here |
| clestobothrium crassiceps | No | species | eukaryota | invertebrates | species | 251508 | click here |
| clostridium botulinum | No | species | bacteria | bacteria | species | 1491 | click here |
| coccidioides immitis | No | species | eukaryota | plants | species | 5501 | click here |
| contracaecum ogmorhini | No | species | eukaryota | invertebrates | species | 139408 | click here |
| contracaecum osculatum | No | species | eukaryota | invertebrates | species | 106324 | click here |
| corynebacterium ulcerans | No | species | bacteria | bacteria | species | 65058 | click here |
| corynosoma australe | No | species | eukaryota | invertebrates | species | 141686 | click here |
| corynosoma cetaceum | No | species | eukaryota | invertebrates | species | 141689 | click here |
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here |
| cryptococcus neoformans | No | species | eukaryota | plants | species | 5207 | click here |
| cryptosporidium sp. | No | species | eukaryota | invertebrates | species | 90962 | click here |
| ctenocephalides felis strongylus | No | subspecies | | | subspecies | 1469617 | click here |
| culicoides imicola | No | species | eukaryota | invertebrates | species | 88399 | click here |
| culicoides obsoletus | No | species | eukaryota | invertebrates | species | 289301 | click here |
| cylicospirura subaequalis | No | species | eukaryota | invertebrates | species | 663715 | click here |
| cystoisospora felis | No | species | eukaryota | invertebrates | species | 482539 | click here |
| cytauxzoon felis | No | species | eukaryota | invertebrates | species | 27996 | click here |
| dipetalonema dracunculoides | No | species | eukaryota | invertebrates | species | 328821 | click here |
| diphyllobothrium cordatum | No | species | eukaryota | invertebrates | species | 372083 | click here |
| dirofilaria immitis | No | species | eukaryota | invertebrates | species | 6287 | click here |
| dirofilaria repens | No | species | eukaryota | invertebrates | species | 31241 | click here |
| dolphin morbillivirus | No | no rank | viruses and viroids | viruses | no rank | 37131 | click here |
| ebola virus | No | subspecies | viruses and viroids | viruses | no rank | 1570291 | click here |
| echinococcus canadensis | No | species | eukaryota | invertebrates | species | 519352 | click here |
| echinococcus equinus | No | species | eukaryota | invertebrates | species | 519353 | click here |
| echinococcus felidis | No | species | eukaryota | invertebrates | species | 460528 | click here |
| echinococcus granulosus | No | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus multilocularis | No | species | eukaryota | invertebrates | species | 6211 | click here |
| echinococcus ortleppi | No | species | eukaryota | invertebrates | species | 446560 | click here |
| echinococcus shiquicus | No | species | eukaryota | invertebrates | species | 260967 | click here |
| encephalitozoon cuniculi | No | species | eukaryota | plants | species | 6035 | click here |
| encephalomyocarditis virus | No | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| enteric coronavirus | No | species | | | species | 28293 | click here |
| enterocytozoon bieneusi | No | species | eukaryota | plants | species | 31281 | click here |
| environmental samples | No | | | environmental samples | no rank | 333811 | click here |