| acanthocheilonema reconditum | Yes | species | eukaryota | invertebrates | species | 114234 | click here |
| achillurbainia nouveli | Yes | species | | | species | | click here |
| acinonyx jubatus papillomavirus type 1 | Yes | species | | | species | 2358483 | click here |
| adelina sp. 1 bcs-2013 | Yes | no rank | | | species | 1383553 | click here |
| aedes aegypti | Yes | species | eukaryota | invertebrates | species | 7159 | click here |
| aedes albopictus | Yes | species | eukaryota | invertebrates | species | 7160 | click here |
| aedes atropalpus | Yes | species | eukaryota | invertebrates | species | 28624 | click here |
| aedes cinereus | Yes | species | eukaryota | invertebrates | species | 120872 | click here |
| aedes flavopictus | Yes | species | eukaryota | invertebrates | species | 166586 | click here |
| aedes geniculatus | Yes | species | eukaryota | invertebrates | species | 120874 | click here |
| aedes japonicus | Yes | species | eukaryota | invertebrates | species | 140438 | click here |
| aedes japonicus japonicus | Yes | subspecies | eukaryota | invertebrates | subspecies | 140439 | click here |
| aedes koreicus | Yes | species | eukaryota | invertebrates | species | 586676 | click here |
| aedes notoscriptus | Yes | species | eukaryota | invertebrates | species | 508665 | click here |
| aedes polynesiensis | Yes | species | eukaryota | invertebrates | species | 188700 | click here |
| aedes vexans | Yes | species | eukaryota | invertebrates | species | 7163 | click here |
| aedes vittatus | Yes | species | eukaryota | invertebrates | species | 317808 | click here |
| aelurostrongylus abstrusus | Yes | species | eukaryota | invertebrates | species | 321389 | click here |
| aeromonas caviae | Yes | species | bacteria | bacteria | species | 648 | click here |
| aeromonas hydrophila | Yes | species | bacteria | bacteria | species | 644 | click here |
| african horse sickness virus | Yes | species | viruses and viroids | viruses | species | 40050 | click here |
| alphacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 693997 | click here |
| alphatron virus | Yes | isolate | | | isolate | 2755033 | click here |
| amblyomma coelebs | Yes | species | eukaryota | invertebrates | species | 251378 | click here |
| amblyomma ovale | Yes | species | eukaryota | invertebrates | species | 208206 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| ancylostoma braziliense | Yes | species | eukaryota | invertebrates | species | 369059 | click here |
| ancylostoma caninum | Yes | species | eukaryota | invertebrates | species | 29170 | click here |
| ancylostoma ceylanicum | Yes | species | eukaryota | invertebrates | species | 53326 | click here |
| ancylostoma paraduodenale | Yes | species | | | species | | click here |
| ancylostoma tubaeforme | Yes | species | eukaryota | invertebrates | species | 53327 | click here |
| anisakis physeteris | Yes | species | eukaryota | invertebrates | species | 290545 | click here |
| anisakis simplex | Yes | species | eukaryota | invertebrates | species | 6269 | click here |
| anopheles atroparvus | Yes | species | eukaryota | invertebrates | species | 41427 | click here |
| anopheles coluzzii | Yes | species | | | species | 1518534 | click here |
| anopheles gambiae | Yes | species | eukaryota | invertebrates | species | 7165 | click here |
| anopheles gambiae s | Yes | no rank | eukaryota | invertebrates | no rank | 377270 | click here |
| anopheles maculipennis | Yes | species | eukaryota | invertebrates | species | 41429 | click here |
| anopheles moucheti | Yes | species | eukaryota | invertebrates | species | 186751 | click here |
| anopheles sinensis | Yes | species | eukaryota | invertebrates | species | 74873 | click here |
| anopheles stephensi | Yes | species | eukaryota | invertebrates | species | 30069 | click here |
| arcanobacterium phocae | Yes | species | bacteria | bacteria | species | 131112 | click here |
| armigeres subalbatus | Yes | species | eukaryota | invertebrates | species | 124917 | click here |
| arthroderma otae | Yes | species | eukaryota | plants | species | 63405 | click here |
| ascaris lumbricoides | Yes | species | eukaryota | invertebrates | species | 6252 | click here |
| ascaris suum | Yes | species | eukaryota | invertebrates | species | 6253 | click here |
| aspergillus terreus | Yes | species | eukaryota | plants | species | 33178 | click here |
| babesia bicornis | Yes | species | eukaryota | invertebrates | species | 176664 | click here |
| babesia bigemina | Yes | species | eukaryota | invertebrates | species | 5866 | click here |
| babesia felis | Yes | species | eukaryota | invertebrates | species | 124135 | click here |
| babesia gibsoni | Yes | species | eukaryota | invertebrates | species | 33632 | click here |
| babesia lengau | Yes | species | eukaryota | invertebrates | species | 796395 | click here |
| babesia leo | Yes | species | eukaryota | invertebrates | species | 124136 | click here |
| babesia microti | Yes | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia sp. | Yes | species | eukaryota | invertebrates | species | 35084 | click here |
| babesia sp. 1 1093 cl9 | Yes | no rank | | | species | 1905364 | click here |
| babesia sp. 10 1092 cl9 | Yes | no rank | | | species | 1905373 | click here |
| babesia sp. 11 1095 | Yes | no rank | | | species | 1905374 | click here |
| babesia sp. 12 1101 | Yes | no rank | | | species | 1905375 | click here |
| babesia sp. 2 1092 cl4 | Yes | no rank | | | species | 1905365 | click here |
| babesia sp. 2 bcs-2013 | Yes | no rank | | | species | 1383552 | click here |
| babesia sp. 3 1093 cl8 | Yes | no rank | | | species | 1905366 | click here |
| babesia sp. 4 1093 cl2 | Yes | no rank | | | species | 1905367 | click here |
| babesia sp. 5 1093 cl7 | Yes | no rank | | | species | 1905368 | click here |
| babesia sp. 6 1092 cl1 | Yes | no rank | | | species | 1905369 | click here |
| babesia sp. 7 1092 cl3 | Yes | no rank | | | species | 1905370 | click here |
| babesia sp. 8 1092 cl5 | Yes | no rank | | | species | 1905371 | click here |
| babesia sp. 9 1093 cl1 | Yes | no rank | | | species | 1905372 | click here |
| babesia sp. bcs-2013b | Yes | no rank | | | species | 1298400 | click here |
| bacillus anthracis | Yes | species | bacteria | bacteria | species | 1392 | click here |
| bacillus cereus | Yes | species | bacteria | bacteria | species | 1396 | click here |
| bacillus megaterium | Yes | species | bacteria | bacteria | species | 1404 | click here |
| bacillus subtilis | Yes | species | bacteria | bacteria | species | 1423 | click here |
| bacillus thuringiensis | Yes | species | bacteria | bacteria | species | 1428 | click here |
| bartonella clarridgeiae | Yes | species | bacteria | bacteria | species | 56426 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| bartonella koehlerae | Yes | species | bacteria | bacteria | species | 92181 | click here |
| bartonella koehlerae subsp. koehlerae | Yes | subspecies | | | subspecies | 1819240 | click here |
| bartonella rochalimae | Yes | species | bacteria | bacteria | species | 395923 | click here |
| bartonella sp. | No | species | bacteria | bacteria | species | 46358 | click here |
| bartonella vinsonii | Yes | species | bacteria | bacteria | species | 33047 | click here |
| bergeyella zoohelcum | Yes | species | bacteria | bacteria | species | 1015 | click here |
| blastocystis hominis | Yes | species | eukaryota | plants | species | 12968 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| blastomyces dermatitidis | Yes | species | eukaryota | plants | species | 5039 | click here |
| bluetongue virus | Yes | species | viruses and viroids | viruses | species | 40051 | click here |
| bovine calicivirus | Yes | no rank | viruses and viroids | viruses | no rank | 37300 | click here |
| bovine spongiform encephalopathy agent | Yes | species | | | species | | click here |
| brevibacillus brevis | Yes | species | bacteria | bacteria | species | 1393 | click here |
| brucella abortus | Yes | species | bacteria | bacteria | species | 235 | click here |
| brucella ceti | Yes | species | bacteria | bacteria | species | 120577 | click here |
| brugia pahangi | Yes | species | eukaryota | invertebrates | species | 6280 | click here |
| burkholderia mallei | Yes | species | bacteria | bacteria | species | 13373 | click here |
| bursaphelenchus xylophilus | Yes | species | eukaryota | invertebrates | species | 6326 | click here |
| cache valley virus | Yes | no rank | viruses and viroids | viruses | no rank | 80935 | click here |
| caenorhabditis elegans | Yes | species | eukaryota | invertebrates | species | 6239 | click here |
| campylobacter insulaenigrae | Yes | species | bacteria | bacteria | species | 260714 | click here |
| candida albicans | Yes | species | eukaryota | plants | species | 5476 | click here |
| candidatus mycoplasma haemominutum | Yes | species | bacteria | bacteria | species | 209446 | click here |
| candidatus mycoplasma turicensis | Yes | species | bacteria | bacteria | species | 346879 | click here |