| acanthocheilonema reconditum | Yes | species | eukaryota | invertebrates | species | 114234 | click here |
| acanthocheilonema viteae | Yes | species | eukaryota | invertebrates | species | 6277 | click here |
| acinetobacter baumannii | Yes | species | bacteria | bacteria | species | 470 | click here |
| actinomyces hordeovulneris | Yes | species | bacteria | bacteria | species | 52770 | click here |
| aedes aegypti | Yes | species | eukaryota | invertebrates | species | 7159 | click here |
| alaria alata | Yes | species | eukaryota | invertebrates | species | 138590 | click here |
| alaria mustelae | Yes | species | eukaryota | invertebrates | species | 669500 | click here |
| alaria taxideae | Yes | species | | | species | 1008877 | click here |
| aleutian mink disease virus | Yes | species | viruses and viroids | viruses | species | 28314 | click here |
| alphacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 693997 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| ancylostoma caninum | Yes | species | eukaryota | invertebrates | species | 29170 | click here |
| angiostrongylus vasorum | Yes | species | eukaryota | invertebrates | species | 321387 | click here |
| aonchotheca putorii | Yes | species | | | species | 1647945 | click here |
| arthroderma vanbreuseghemii | Yes | species | eukaryota | plants | species | 63407 | click here |
| ascaris columnaris | Yes | species | | | species | | click here |
| ascaris suum | Yes | species | eukaryota | invertebrates | species | 6253 | click here |
| aspergillus insolitus | Yes | species | | | species | 1131488 | click here |
| avian gyrovirus 2 | Yes | species | | | species | 1002273 | click here |
| bartonella washoensis | Yes | species | bacteria | bacteria | species | 186739 | click here |
| baylisascaris devosi | Yes | species | | invertebrates | species | 1572086 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| blastomyces dermatitidis | Yes | species | eukaryota | plants | species | 5039 | click here |
| bovine herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10320 | click here |
| brugia malayi | Yes | species | eukaryota | invertebrates | species | 6279 | click here |
| brugia pahangi | Yes | species | eukaryota | invertebrates | species | 6280 | click here |
| bundibugyo ebolavirus | Yes | species | viruses and viroids | viruses | species | 565995 | click here |
| caenorhabditis elegans | Yes | species | eukaryota | invertebrates | species | 6239 | click here |
| campylobacter coli | Yes | species | bacteria | bacteria | species | 195 | click here |
| campylobacter fetus | Yes | species | bacteria | bacteria | species | 196 | click here |
| campylobacter jejuni | Yes | species | bacteria | bacteria | species | 197 | click here |
| canid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 170325 | click here |
| canine coronavirus | Yes | no rank | viruses and viroids | viruses | no rank | 11153 | click here |
| canine distemper virus | Yes | species | viruses and viroids | viruses | species | 11232 | click here |
| canine mastadenovirus a | Yes | species | viruses and viroids | viruses | species | 10537 | click here |
| canine parainfluenza virus | Yes | species | viruses and viroids | viruses | species | 149595 | click here |
| canine parvovirus | Yes | no rank | viruses and viroids | viruses | no rank | 10788 | click here |
| canine rotavirus | Yes | no rank | viruses and viroids | viruses | no rank | 35337 | click here |
| capillaria entomelas | Yes | species | | | species | | click here |
| capillaria mucronata | Yes | species | | | species | | click here |
| capillaria plica | Yes | species | | | species | 1239593 | click here |
| capillaria putorii | Yes | species | | | species | 1239594 | click here |
| carnivore amdoparvovirus 1 | Yes | species | | | species | 1511862 | click here |
| clostridium acetobutylicum | Yes | species | bacteria | bacteria | species | 1488 | click here |
| clostridium botulinum | Yes | species | bacteria | bacteria | species | 1491 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| concinnum ten | Yes | species | eukaryota | invertebrates | species | 676610 | click here |
| corynebacterium mustelae | Yes | no rank | bacteria | bacteria | species | 571915 | click here |
| corynebacterium resistens | Yes | species | bacteria | bacteria | species | 258224 | click here |
| corynebacterium ulcerans | Yes | species | bacteria | bacteria | species | 65058 | click here |
| corynebacterium urealyticum | Yes | species | bacteria | bacteria | species | 43771 | click here |
| cowpox virus | Yes | species | viruses and viroids | viruses | species | 10243 | click here |
| crenosoma striatum | Yes | species | eukaryota | invertebrates | species | 699426 | click here |
| crenosoma vulpis | Yes | species | eukaryota | invertebrates | species | 321390 | click here |
| cryptococcus gattii vgi | Yes | species | | | species | 37769 | click here |
| cryptococcus gattii vgiii | Yes | species | eukaryota | plants | species | 552467 | click here |
| cryptocotyle lingua | Yes | species | eukaryota | invertebrates | species | 66766 | click here |
| cryptosporidium hominis | Yes | species | eukaryota | invertebrates | species | 237895 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. | Yes | species | eukaryota | invertebrates | species | 90962 | click here |
| cryptosporidium sp. 351 | Yes | no rank | eukaryota | invertebrates | species | 138187 | click here |
| cryptosporidium sp. chb-01 | Yes | no rank | eukaryota | invertebrates | species | 447336 | click here |
| cryptosporidium sp. chb-02 | Yes | no rank | eukaryota | invertebrates | species | 447337 | click here |
| cryptosporidium sp. chb-03 | Yes | no rank | eukaryota | invertebrates | species | 447338 | click here |
| cryptosporidium sp. chb-04 | Yes | no rank | eukaryota | invertebrates | species | 447339 | click here |
| cryptosporidium sp. chb-05 | Yes | no rank | eukaryota | invertebrates | species | 447340 | click here |
| cryptosporidium sp. chb-06 | Yes | no rank | eukaryota | invertebrates | species | 447341 | click here |
| cryptosporidium sp. ferret genotype | Yes | no rank | eukaryota | invertebrates | species | 574837 | click here |
| cryptosporidium sp. mink genotype | Yes | no rank | eukaryota | invertebrates | species | 468638 | click here |
| cryptosporidium suis | Yes | species | eukaryota | invertebrates | species | 396558 | click here |
| demodex canis | Yes | species | eukaryota | invertebrates | species | 188545 | click here |
| desulfovibrio sp. | Yes | species | bacteria | bacteria | species | 885 | click here |
| dictophyma renale | Yes | species | | | species | | click here |
| diphyllobothrium latum | Yes | species | eukaryota | invertebrates | species | 60516 | click here |
| dirofilaria immitis | Yes | species | eukaryota | invertebrates | species | 6287 | click here |
| dracunculus insignis | Yes | species | eukaryota | invertebrates | species | 331418 | click here |
| dracunculus medinensis | Yes | species | eukaryota | invertebrates | species | 318479 | click here |
| ebola virus | Yes | subspecies | viruses and viroids | viruses | no rank | 1570291 | click here |
| echinococcus granulosus | Yes | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus multilocularis | Yes | species | eukaryota | invertebrates | species | 6211 | click here |
| eimeria cf. ictidea jrb-2016 | Yes | no rank | | | species | 1793137 | click here |
| eimeria furonis | Yes | species | eukaryota | invertebrates | species | 352384 | click here |
| emmonsia crescens | Yes | species | eukaryota | plants | species | 73230 | click here |
| emmonsia parva | Yes | species | eukaryota | plants | species | 73231 | click here |
| emmonsia parva uamh 139 | No | no rank | | | no rank | 1246674 | click here |
| encephalitozoon cuniculi | Yes | species | eukaryota | plants | species | 6035 | click here |
| enteric coronavirus | Yes | species | | | species | 28293 | click here |
| enterovirus d68 | Yes | no rank | viruses and viroids | viruses | no rank | 42789 | click here |
| erysipelothrix rhusiopathiae | Yes | species | bacteria | bacteria | species | 1648 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| eucoleus aerophilus | Yes | species | | | species | 1237089 | click here |
| eucoleus sp. toda-2010c | Yes | no rank | | | species | 1647933 | click here |
| euparyphium melis | Yes | species | eukaryota | invertebrates | species | 99739 | click here |
| european bat lyssavirus 1 | Yes | species | viruses and viroids | viruses | species | 57482 | click here |
| european bat lyssavirus 2 | Yes | species | viruses and viroids | viruses | species | 57483 | click here |
| euryhelmis costaricensis | Yes | species | eukaryota | invertebrates | species | 676601 | click here |
| euryhelmis squamula | Yes | species | | | species | | click here |
| felid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10334 | click here |
| feline calicivirus | Yes | species | viruses and viroids | viruses | species | 11978 | click here |
| feline coronavirus | Yes | no rank | viruses and viroids | viruses | no rank | 12663 | click here |