| aelurostrongylus falciformis | No | species | | | species | | click here |
| alaria alata | No | species | eukaryota | invertebrates | species | 138590 | click here |
| aleutian mink disease virus | No | species | viruses and viroids | viruses | species | 28314 | click here |
| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here |
| ancylostoma caninum | No | species | eukaryota | invertebrates | species | 29170 | click here |
| ancylostoma kusimaensis | Yes | species | | | species | | click here |
| angiostrongylus daskalovi | No | species | | | species | 1886661 | click here |
| angiostrongylus vasorum | No | species | eukaryota | invertebrates | species | 321387 | click here |
| aonchotheca putorii | No | species | | | species | 1647945 | click here |
| arcanobacterium haemolyticum | No | species | bacteria | bacteria | species | 28264 | click here |
| babesia annae | No | species | eukaryota | invertebrates | species | 1811913 | click here |
| babesia microti | No | species | eukaryota | invertebrates | species | 5868 | click here |
| babesia sp. | No | species | eukaryota | invertebrates | species | 35084 | click here |
| babesia sp. badger type a | No | no rank | | | species | 1842981 | click here |
| babesia sp. badger type b | No | no rank | | | species | 1842982 | click here |
| badger feces-associated gemycircularvirus | No | species | | | species | 1634484 | click here |
| bartonella alsatica | No | species | bacteria | bacteria | species | 52764 | click here |
| bartonella clarridgeiae | No | species | bacteria | bacteria | species | 56426 | click here |
| bartonella henselae | No | species | bacteria | bacteria | species | 38323 | click here |
| bartonella rochalimae | No | species | bacteria | bacteria | species | 395923 | click here |
| borreliella afzelii | No | species | bacteria | bacteria | species | 29518 | click here |
| brucella abortus | No | species | bacteria | bacteria | species | 235 | click here |
| brucella melitensis | No | species | bacteria | bacteria | species | 29459 | click here |
| candidatus neoehrlichia sp. | No | species | | | species | 1884427 | click here |
| canine adenovirus 1 | No | no rank | viruses and viroids | viruses | no rank | 10512 | click here |
| canine circovirus | No | species | | | species | 1194757 | click here |
| canine coronavirus | No | no rank | viruses and viroids | viruses | no rank | 11153 | click here |
| canine distemper virus | No | species | viruses and viroids | viruses | species | 11232 | click here |
| canine mastadenovirus a | No | species | viruses and viroids | viruses | species | 10537 | click here |
| canine parvovirus | No | no rank | viruses and viroids | viruses | no rank | 10788 | click here |
| canine parvovirus 2c | No | no rank | viruses and viroids | viruses | no rank | 544789 | click here |
| capillaria plica | No | species | | | species | 1239593 | click here |
| carnivore amdoparvovirus 1 | No | species | | | species | 1511862 | click here |
| chrysosporium parvum | No | species | eukaryota | plants | species | 41283 | click here |
| concinnum ten | No | species | eukaryota | invertebrates | species | 676610 | click here |
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here |
| crenosoma striatum | No | species | eukaryota | invertebrates | species | 699426 | click here |
| crenosoma vulpis | No | species | eukaryota | invertebrates | species | 321390 | click here |
| cryptosporidium andersoni | No | species | eukaryota | invertebrates | species | 117008 | click here |
| cryptosporidium erinacei | No | species | | | species | 1429248 | click here |
| cryptosporidium hominis | No | species | eukaryota | invertebrates | species | 237895 | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. skunk genotype | No | no rank | eukaryota | invertebrates | species | 564991 | click here |
| cystoisospora sp. badger | No | no rank | | | species | 1842984 | click here |
| dipylidium caninum | No | species | eukaryota | invertebrates | species | 66787 | click here |
| dirofilaria immitis | No | species | eukaryota | invertebrates | species | 6287 | click here |
| echinococcus granulosus | No | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus multilocularis | No | species | eukaryota | invertebrates | species | 6211 | click here |
| emmonsia crescens | No | species | eukaryota | plants | species | 73230 | click here |
| enterococcus faecalis | No | species | bacteria | bacteria | species | 1351 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| eucoleus aerophilus | No | species | | | species | 1237089 | click here |
| euparyphium melis | No | species | eukaryota | invertebrates | species | 99739 | click here |
| euryhelmis costaricensis | No | species | eukaryota | invertebrates | species | 676601 | click here |
| feline leukemia virus | No | species | viruses and viroids | viruses | species | 11768 | click here |
| feline panleukopenia virus | No | no rank | viruses and viroids | viruses | no rank | 10786 | click here |
| giardia intestinalis | No | species | eukaryota | invertebrates | species | 5741 | click here |
| hepatozoon sp. badger | No | no rank | | | species | 1842985 | click here |
| histoplasma capsulatum | No | species | eukaryota | plants | species | 5037 | click here |
| influenza a virus | No | species | viruses and viroids | viruses | species | 11320 | click here |
| isthmiophora melis | No | species | eukaryota | invertebrates | species | 220796 | click here |
| ixodes canisuga | No | species | eukaryota | invertebrates | species | 662032 | click here |
| ixodes hexagonus | No | species | eukaryota | invertebrates | species | 34612 | click here |
| ixodes kaiseri | No | species | | | species | 1389252 | click here |
| ixodes ricinus | No | species | eukaryota | invertebrates | species | 34613 | click here |
| ixodes sinensis | No | species | eukaryota | invertebrates | species | 339422 | click here |
| lactobacillus plantarum | No | species | bacteria | bacteria | species | 1590 | click here |
| lactobacillus reuteri | No | species | bacteria | bacteria | species | 1598 | click here |
| leishmania infantum | No | species | eukaryota | invertebrates | species | 5671 | click here |
| leptospira interrogans | No | species | bacteria | bacteria | species | 173 | click here |
| lipoptena cervi | No | species | eukaryota | invertebrates | species | 170903 | click here |
| malassezia pachydermatis | No | species | eukaryota | plants | species | 77020 | click here |
| mastophorus muris | No | species | | | species | 1499391 | click here |
| meles meles circovirus-like virus | No | species | | | species | 1128073 | click here |
| meles meles fecal virus | No | no rank | | | no rank | 1128422 | click here |
| meles meles polyomavirus 1 | No | species | | | species | 1608323 | click here |
| mesocestoides leptothylacus | No | species | eukaryota | invertebrates | species | 160007 | click here |
| mesocestoides lineatus | No | species | eukaryota | invertebrates | species | 160008 | click here |
| murine leukemia virus | No | species | viruses and viroids | viruses | species | 11786 | click here |
| mustelid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 311179 | click here |
| mycobacterium avium | No | species | bacteria | bacteria | species | 1764 | click here |
| mycobacterium avium complex | No | subspecies | bacteria | bacteria | species | 37162 | click here |
| mycobacterium bouchedurhonense | No | species | bacteria | bacteria | species | 701041 | click here |
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here |
| mycobacterium florentinum | No | species | bacteria | bacteria | species | 292462 | click here |
| mycobacterium interjectum | No | species | bacteria | bacteria | species | 33895 | click here |
| mycobacterium kumamotonense | No | species | bacteria | bacteria | species | 354243 | click here |
| mycobacterium septicum | No | species | bacteria | bacteria | species | 98668 | click here |
| mycobacterium sp. | No | species | bacteria | bacteria | species | 1785 | click here |
| mycobacterium tuberculosis | No | species | bacteria | bacteria | species | 1773 | click here |
| mycobacterium vulneris | No | species | bacteria | bacteria | species | 547163 | click here |
| mycoplasma haemocanis | No | species | bacteria | bacteria | species | 136241 | click here |
| mycoplasma sp. | No | species | bacteria | bacteria | species | 2108 | click here |
| neospora caninum | No | species | eukaryota | invertebrates | species | 29176 | click here |
| opisthorchis sinensis | No | species | eukaryota | invertebrates | species | 41765 | click here |
| paraceras melis melis | No | subspecies | | | subspecies | 1391632 | click here |
| pediococcus acidilactici | No | species | bacteria | bacteria | species | 1254 | click here |
| pediococcus pentosaceus | No | species | bacteria | bacteria | species | 1255 | click here |
| perostrongylus falciformis | No | species | | | species | 2026713 | click here |
| phocine distemper virus | No | species | viruses and viroids | viruses | species | 11240 | click here |