| acanthocheilonema viteae | Yes | species | eukaryota | invertebrates | species | 6277 | click here |
| adenoviridae sp. | Yes | species | | | species | 2558248 | click here |
| aedes aegypti | Yes | species | eukaryota | invertebrates | species | 7159 | click here |
| aedes albopictus | Yes | species | eukaryota | invertebrates | species | 7160 | click here |
| aggregatibacter aphrophilus | Yes | species | bacteria | bacteria | species | 732 | click here |
| ancylostoma duodenale | Yes | species | eukaryota | invertebrates | species | 51022 | click here |
| anopheles demeilloni | Yes | species | | | species | 1521113 | click here |
| anopheles freeborni | Yes | species | eukaryota | invertebrates | species | 7170 | click here |
| anopheles gambiae | Yes | species | eukaryota | invertebrates | species | 7165 | click here |
| anopheles implexus | Yes | species | eukaryota | invertebrates | species | 667562 | click here |
| anopheles stephensi | Yes | species | eukaryota | invertebrates | species | 30069 | click here |
| anopheles vinckei | Yes | species | | | species | 1300248 | click here |
| ascaris lumbricoides | No | species | eukaryota | invertebrates | species | 6252 | click here |
| ascaris lumbricoides | Yes | species | eukaryota | invertebrates | species | 6252 | click here |
| ascaris sp. chimpanzee-ca | Yes | no rank | | | species | 1343731 | click here |
| ascaris sp. pt2 tw-2009 | Yes | no rank | eukaryota | invertebrates | species | 641121 | click here |
| ascaris suum | Yes | species | eukaryota | invertebrates | species | 6253 | click here |
| astrovirus sp. | Yes | no rank | viruses and viroids | viruses | species | 178530 | click here |
| bacillus anthracis | Yes | species | bacteria | bacteria | species | 1392 | click here |
| bacillus cereus | Yes | species | bacteria | bacteria | species | 1396 | click here |
| bacteroides ovatus | Yes | species | bacteria | bacteria | species | 28116 | click here |
| bacteroides xylanisolvens | Yes | species | bacteria | bacteria | species | 371601 | click here |
| bertiella satyri | Yes | species | eukaryota | invertebrates | species | 578853 | click here |
| bertiella sp. b5 | Yes | no rank | | | species | 1276862 | click here |
| bertiella sp. b6 | Yes | no rank | | | species | 1276863 | click here |
| bertiella sp. mm-2016a | Yes | no rank | | | species | 1904911 | click here |
| bertiella sp. mm-2016b | Yes | no rank | | | species | 1904912 | click here |
| bertiella sp. mm-2016c | Yes | no rank | | | species | 1904913 | click here |
| bertiella studeri | Yes | species | eukaryota | invertebrates | species | 578852 | click here |
| bifidobacterium animalis subsp. lactis | Yes | subspecies | bacteria | bacteria | subspecies | 302911 | click here |
| bifidobacterium dentium | Yes | species | bacteria | bacteria | species | 1689 | click here |
| bifidobacterium moukalabense | Yes | species | | | species | 1333651 | click here |
| bifidobacterium sp. | Yes | no rank | bacteria | bacteria | species | 41200 | click here |
| bifidobacterium sp. dsm 109963 | Yes | no rank | | | species | 2705428 | click here |
| blastocystis hominis | Yes | species | eukaryota | plants | species | 12968 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| blastocystis sp. 05/345 | Yes | no rank | eukaryota | plants | species | 380407 | click here |
| blastocystis sp. subtype 1 | Yes | no rank | eukaryota | plants | species | 944036 | click here |
| blastocystis sp. subtype 1 strain chimp17 | Yes | no rank | eukaryota | plants | no rank | 926706 | click here |
| blastocystis sp. subtype 1 strain chimp23 | Yes | no rank | eukaryota | plants | no rank | 926707 | click here |
| blastocystis sp. subtype 1 strain chimp40 | Yes | no rank | eukaryota | plants | no rank | 926708 | click here |
| blastocystis sp. subtype 1 strain chimp44 | Yes | no rank | eukaryota | plants | no rank | 926709 | click here |
| blastocystis sp. subtype 2 | Yes | no rank | eukaryota | plants | species | 944160 | click here |
| blastocystis sp. subtype 5 | Yes | no rank | eukaryota | plants | species | 944169 | click here |
| blastocystis sp. subtype 8 | Yes | no rank | eukaryota | plants | species | 429571 | click here |
| bocavirus chimpanzee/pt-lm1861/cmr | Yes | no rank | viruses and viroids | viruses | species | 877181 | click here |
| bodo saltans | Yes | species | eukaryota | invertebrates | species | 75058 | click here |
| bonobo alphaherpesvirus | Yes | species | | | species | 2760740 | click here |
| bundibugyo ebolavirus | Yes | species | viruses and viroids | viruses | species | 565995 | click here |
| bunyamwera orthobunyavirus | Yes | species | | | species | 1933179 | click here |
| bunyamwera virus | Yes | species | viruses and viroids | viruses | species | 35304 | click here |
| caenorhabditis briggsae | Yes | species | eukaryota | invertebrates | species | 6238 | click here |
| campylobacter troglodytis | Yes | species | bacteria | bacteria | species | 654363 | click here |
| candida albicans | Yes | species | eukaryota | plants | species | 5476 | click here |
| cardiovirus a | Yes | species | | | species | 1821749 | click here |
| chikungunya virus | Yes | species | viruses and viroids | viruses | species | 37124 | click here |
| chilomastix mesnili | Yes | species | eukaryota | invertebrates | species | 472572 | click here |
| chimpanzee adenovirus | Yes | species | viruses and viroids | viruses | species | 310542 | click here |
| chimpanzee adenovirus y25 | Yes | no rank | | | no rank | 1123958 | click here |
| chimpanzee alpha-1 herpesvirus | Yes | species | viruses and viroids | viruses | species | 332937 | click here |
| chimpanzee anellovirus | Yes | species | | | species | 1743410 | click here |
| chimpanzee associated porprismacovirus 1 | Yes | species | | | species | 2170109 | click here |
| chimpanzee associated porprismacovirus 2 | Yes | species | | | species | 2170110 | click here |
| chimpanzee enterovirus cps-2011 | Yes | no rank | viruses and viroids | viruses | species | 991803 | click here |
| chimpanzee faeces associated circular dna molecule 1 | Yes | no rank | | | species | 1676185 | click here |
| chimpanzee faeces associated circular dna virus 1 | Yes | species | | | species | 1676184 | click here |
| chimpanzee faeces associated microphage 1 | Yes | no rank | | | species | 1676181 | click here |
| chimpanzee faeces associated microphage 2 | Yes | no rank | | | species | 1676182 | click here |
| chimpanzee faeces associated microphage 3 | Yes | no rank | | | species | 1676183 | click here |
| chimpanzee papillomavirus | Yes | species | viruses and viroids | viruses | species | 203380 | click here |
| chimpanzee parv4 | Yes | no rank | | | no rank | 1511922 | click here |
| chimpanzee polyomavirus | Yes | species | viruses and viroids | viruses | species | 305677 | click here |
| chimpanzee smacovirus | Yes | species | | | species | 1603067 | click here |
| chimpanzee stool associated circular ssdna virus | Yes | species | viruses and viroids | viruses | species | 702718 | click here |
| chimpanzee stool avian-like circovirus chimp17 | Yes | no rank | viruses and viroids | viruses | no rank | 743290 | click here |
| circovirus chimp161 | Yes | no rank | viruses and viroids | viruses | no rank | 743527 | click here |
| circovirus chimp41 | Yes | no rank | viruses and viroids | viruses | no rank | 743526 | click here |
| circovirus sp. | Yes | species | | | species | 1964372 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| coccidioides immitis | Yes | species | eukaryota | plants | species | 5501 | click here |
| coxsackievirus a13 | Yes | no rank | viruses and viroids | viruses | no rank | 42772 | click here |
| coxsackievirus b3 | Yes | no rank | viruses and viroids | viruses | no rank | 12072 | click here |
| cryptosporidium cuniculus | Yes | species | eukaryota | invertebrates | species | 564424 | click here |
| cryptosporidium hominis | Yes | species | eukaryota | invertebrates | species | 237895 | click here |
| cryptosporidium ubiquitum | Yes | species | eukaryota | invertebrates | species | 857276 | click here |
| cyclospora cayetanensis | Yes | species | eukaryota | invertebrates | species | 88456 | click here |
| cyclovirus chimp11 | Yes | no rank | viruses and viroids | viruses | species | 742920 | click here |
| cyclovirus chimp12 | Yes | no rank | viruses and viroids | viruses | species | 742921 | click here |
| cyclovirus chimp13 | Yes | no rank | viruses and viroids | viruses | species | 742940 | click here |
| cyclovirus chimp32 | Yes | no rank | viruses and viroids | viruses | species | 742942 | click here |
| cyclovirus chimp53 | Yes | no rank | viruses and viroids | viruses | species | 742943 | click here |
| cyclovirus chimp73 | Yes | no rank | viruses and viroids | viruses | species | 742941 | click here |
| dengue virus | Yes | species | viruses and viroids | viruses | species | 12637 | click here |
| ebola virus | Yes | subspecies | viruses and viroids | viruses | no rank | 1570291 | click here |
| echovirus e15 | Yes | no rank | viruses and viroids | viruses | no rank | 47503 | click here |
| echovirus e29 | Yes | no rank | viruses and viroids | viruses | no rank | 47512 | click here |
| encephalitozoon hellem | Yes | species | eukaryota | plants | species | 27973 | click here |
| encephalitozoon intestinalis | Yes | species | eukaryota | plants | species | 58839 | click here |
| encephalitozoon sp. cr0893 | Yes | no rank | | | species | 1701406 | click here |
| encephalomyocarditis virus | Yes | no rank | viruses and viroids | viruses | no rank | 12104 | click here |