| angiostrongylus cantonensis | Yes | species | eukaryota | invertebrates | species | 6313 | click here |
| angiostrongylus costaricensis | Yes | species | eukaryota | invertebrates | species | 334426 | click here |
| angiostrongylus dujardini | Yes | species | eukaryota | invertebrates | species | 274538 | click here |
| ascaris lumbricoides | Yes | species | eukaryota | invertebrates | species | 6252 | click here |
| ateline herpesvirus 2 | Yes | species | viruses and viroids | viruses | species | 10380 | click here |
| bifidobacterium aerophilum | Yes | species | | | species | 1798155 | click here |
| bifidobacterium avesanii | Yes | species | | | species | 1798157 | click here |
| bifidobacterium biavatii dsm 23969 | Yes | no rank | | | no rank | 1437608 | click here |
| bifidobacterium callitrichidarum | Yes | species | | | species | 2028103 | click here |
| bifidobacterium felsineum | Yes | species | | | species | 2045440 | click here |
| bifidobacterium primatium | Yes | species | | | species | 2045438 | click here |
| bifidobacterium ramosum | Yes | species | | | species | 1798158 | click here |
| bifidobacterium saguini | Yes | no rank | bacteria | bacteria | species | 762210 | click here |
| bifidobacterium saguini dsm 23967 | Yes | no rank | | | no rank | 1437607 | click here |
| bifidobacterium scaligerum | Yes | species | | | species | 2052656 | click here |
| bifidobacterium simiarum | Yes | species | | | species | 2045441 | click here |
| bifidobacterium sp. | Yes | no rank | bacteria | bacteria | species | 41200 | click here |
| bifidobacterium sp. dsm 109957 | Yes | no rank | | | species | 2705429 | click here |
| bifidobacterium sp. dsm 109959 | Yes | no rank | | | species | 2705431 | click here |
| bifidobacterium stellenboschense | Yes | no rank | bacteria | bacteria | species | 762211 | click here |
| bifidobacterium vansinderenii | Yes | species | | | species | 1984871 | click here |
| blastocystis hominis | Yes | species | eukaryota | plants | species | 12968 | click here |
| brackiella oedipodis dsm 13743 | Yes | no rank | | | no rank | 1121118 | click here |
| brugia malayi | Yes | species | eukaryota | invertebrates | species | 6279 | click here |
| brugia pahangi | Yes | species | eukaryota | invertebrates | species | 6280 | click here |
| cotton-top tamarin adenovirus | Yes | species | | | species | 2301501 | click here |
| cowpox virus | Yes | species | viruses and viroids | viruses | species | 10243 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| dengue virus | Yes | species | viruses and viroids | viruses | species | 12637 | click here |
| dipetalonema gracile | Yes | species | eukaryota | invertebrates | species | 221945 | click here |
| dipetalonema graciliformis | Yes | species | | invertebrates | species | 1766040 | click here |
| dipetalonema sp. gae-2017 | Yes | no rank | | | species | 1979298 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| gbv-a-like agents | Yes | no rank | viruses and viroids | viruses | no rank | 339847 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| hantavirus sp. | Yes | species | viruses and viroids | viruses | species | 37741 | click here |
| helicobacter hepaticus | Yes | species | bacteria | bacteria | species | 32025 | click here |
| helicobacter saguini | Yes | species | | | species | 1548018 | click here |
| helicobacter sp. 'flexispira taxon 10' | Yes | no rank | bacteria | bacteria | species | 85090 | click here |
| hepatitis gb virus b | Yes | no rank | viruses and viroids | viruses | species | 39113 | click here |
| hepatovirus a | Yes | species | viruses and viroids | viruses | species | 12092 | click here |
| human endogenous retrovirus | Yes | species | viruses and viroids | viruses | species | 11827 | click here |
| human hepatitis a virus | Yes | no rank | viruses and viroids | viruses | no rank | 208726 | click here |
| human herpesvirus 4 | Yes | species | viruses and viroids | viruses | species | 10376 | click here |
| human herpesvirus 6 | Yes | species | viruses and viroids | viruses | species | 10368 | click here |
| hymenolepis diminuta | Yes | species | eukaryota | invertebrates | species | 6216 | click here |
| indiana vesiculovirus | Yes | species | | | species | 1972577 | click here |
| klebsiella pneumoniae | Yes | species | bacteria | bacteria | species | 573 | click here |
| leishmania chagasi | Yes | species | eukaryota | invertebrates | species | 44271 | click here |
| macaca mulatta cytomegalovirus | Yes | species | viruses and viroids | viruses | species | 10373 | click here |
| macacine herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10325 | click here |
| mansonella atelensis | Yes | species | eukaryota | invertebrates | species | 459503 | click here |
| mansonella mariae | Yes | species | eukaryota | invertebrates | species | 474920 | click here |
| mayaro virus | Yes | species | viruses and viroids | viruses | species | 59301 | click here |
| measles virus | Yes | species | viruses and viroids | viruses | species | 11234 | click here |
| mycobacterium asiaticum | Yes | species | bacteria | bacteria | species | 1790 | click here |
| mycobacterium avium | Yes | species | bacteria | bacteria | species | 1764 | click here |
| pegivirus a | Yes | species | viruses and viroids | viruses | species | 1307800 | click here |
| plasmodium brasilianum | Yes | species | eukaryota | invertebrates | species | 5824 | click here |
| plasmodium falciparum | Yes | species | eukaryota | invertebrates | species | 5833 | click here |
| pneumocystis carinii | Yes | species | eukaryota | plants | species | 4754 | click here |
| prosthenorchis elegans | Yes | species | | | species | 1781191 | click here |
| red-bellied tamarin adenovirus | Yes | species | | | species | 2301509 | click here |
| red-handed tamarin adenovirus 1 | Yes | species | | | species | 2301514 | click here |
| red-handed tamarin adenovirus 2.1 | Yes | species | | | species | 2301515 | click here |
| red-handed tamarin adenovirus 2.2 | Yes | species | | | species | 2301516 | click here |
| saguinine gammaherpesvirus 1 | No | species | | | species | 2169901 | click here |
| saguinus adenovirus 1 | Yes | species | | | species | 1088786 | click here |
| saguinus midas lymphocryptovirus 1 | Yes | species | viruses and viroids | viruses | species | 219817 | click here |
| saguinus oedipus lymphocryptovirus 1 | Yes | species | | | species | 1093782 | click here |
| saimiriine herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10353 | click here |
| saimiriine herpesvirus 2 | Yes | species | viruses and viroids | viruses | species | 10381 | click here |
| salmonella enterica subsp. enterica serovar typhi | Yes | no rank | bacteria | bacteria | no rank | 90370 | click here |
| sanguinine herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 50291 | click here |
| schistosoma mansoni | Yes | species | eukaryota | invertebrates | species | 6183 | click here |
| shigella sonnei | Yes | species | bacteria | bacteria | species | 624 | click here |
| simian hepatitis a virus | Yes | no rank | viruses and viroids | viruses | no rank | 12101 | click here |
| simian hepatitis a virus cercopithecus/kenya/agm-27/1985 | Yes | no rank | viruses and viroids | viruses | no rank | 12102 | click here |
| staphylococcus aureus | Yes | species | bacteria | bacteria | species | 1280 | click here |
| streptococcus pneumoniae | Yes | species | bacteria | bacteria | species | 1313 | click here |
| torque teno tamarin virus | Yes | species | viruses and viroids | viruses | species | 687382 | click here |
| torque teno virus | Yes | species | viruses and viroids | viruses | species | 68887 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichuris trichiura | Yes | species | eukaryota | invertebrates | species | 36087 | click here |
| trypanosoma cruzi | Yes | species | eukaryota | invertebrates | species | 5693 | click here |
| trypanosoma minasense | Yes | species | eukaryota | invertebrates | species | 83893 | click here |
| trypanosoma rangeli | Yes | species | eukaryota | invertebrates | species | 5698 | click here |
| trypanosoma sp. hs-tamarin15 | Yes | no rank | eukaryota | invertebrates | species | 507874 | click here |
| uncultured kinetoplastid | Yes | no rank | eukaryota | environmental samples | species | 204529 | click here |
| ureaplasma sp. | Yes | species | | | species | 1965234 | click here |
| vesicular stomatitis virus | Yes | species | viruses and viroids | viruses | species | 11276 | click here |
| yellow fever virus | Yes | species | viruses and viroids | viruses | species | 11089 | click here |
| zika virus | Yes | species | viruses and viroids | viruses | species | 64320 | click here |