| actinomyces sp. | Yes | species | bacteria | bacteria | species | 29317 | click here |
| aedes aegypti | Yes | species | eukaryota | invertebrates | species | 7159 | click here |
| aggregatibacter actinomycetemcomitans | Yes | species | bacteria | bacteria | species | 714 | click here |
| alaria marcianae | Yes | species | | | species | 1684801 | click here |
| angiostrongylus cantonensis | Yes | species | eukaryota | invertebrates | species | 6313 | click here |
| angiostrongylus costaricensis | Yes | species | eukaryota | invertebrates | species | 334426 | click here |
| angiostrongylus dujardini | Yes | species | eukaryota | invertebrates | species | 274538 | click here |
| argentinian mammarenavirus | Yes | species | | | species | 2169991 | click here |
| ascaris lumbricoides | Yes | species | eukaryota | invertebrates | species | 6252 | click here |
| ateline herpesvirus 2 | Yes | species | viruses and viroids | viruses | species | 10380 | click here |
| bacillus anthracis | Yes | species | bacteria | bacteria | species | 1392 | click here |
| bifidobacterium adolescentis | Yes | species | bacteria | bacteria | species | 1680 | click here |
| bifidobacterium aerophilum | Yes | species | | | species | 1798155 | click here |
| bifidobacterium aesculapii | Yes | species | | | species | 1329411 | click here |
| bifidobacterium avesanii | Yes | species | | | species | 1798157 | click here |
| bifidobacterium biavatii dsm 23969 | Yes | no rank | | | no rank | 1437608 | click here |
| bifidobacterium callitrichidarum | Yes | species | | | species | 2028103 | click here |
| bifidobacterium callitrichos | Yes | no rank | bacteria | bacteria | species | 762209 | click here |
| bifidobacterium callitrichos dsm 23973 | Yes | no rank | | | no rank | 1437609 | click here |
| bifidobacterium felsineum | Yes | species | | | species | 2045440 | click here |
| bifidobacterium hapali | Yes | species | | | species | 1630172 | click here |
| bifidobacterium myosotis | Yes | species | | | species | 1630166 | click here |
| bifidobacterium primatium | Yes | species | | | species | 2045438 | click here |
| bifidobacterium ramosum | Yes | species | | | species | 1798158 | click here |
| bifidobacterium reuteri | Yes | no rank | bacteria | bacteria | species | 983706 | click here |
| bifidobacterium reuteri dsm 23975 | Yes | no rank | | | no rank | 1437610 | click here |
| bifidobacterium saguini | Yes | no rank | bacteria | bacteria | species | 762210 | click here |
| bifidobacterium saguini dsm 23967 | Yes | no rank | | | no rank | 1437607 | click here |
| bifidobacterium scaligerum | Yes | species | | | species | 2052656 | click here |
| bifidobacterium simiarum | Yes | species | | | species | 2045441 | click here |
| bifidobacterium sp. | Yes | no rank | bacteria | bacteria | species | 41200 | click here |
| bifidobacterium sp. 77 | Yes | no rank | bacteria | bacteria | species | 361854 | click here |
| bifidobacterium sp. dsm 109957 | Yes | no rank | | | species | 2705429 | click here |
| bifidobacterium sp. dsm 109958 | Yes | no rank | | | species | 2705430 | click here |
| bifidobacterium sp. dsm 109959 | Yes | no rank | | | species | 2705431 | click here |
| bifidobacterium sp. mrm 5.21 | Yes | no rank | | | species | 1630163 | click here |
| bifidobacterium sp. mrm 5.22 | Yes | no rank | | | species | 1630164 | click here |
| bifidobacterium sp. mrm 5.29 | Yes | no rank | | | species | 1630165 | click here |
| bifidobacterium sp. mrm 6.22 | Yes | no rank | | | species | 1630167 | click here |
| bifidobacterium sp. mrm 7.05 | Yes | no rank | | | species | 1630168 | click here |
| bifidobacterium sp. mrm 7.15 | Yes | no rank | | | species | 1630169 | click here |
| bifidobacterium sp. mrm 8.11 | Yes | no rank | | | species | 1630170 | click here |
| bifidobacterium sp. mrm 8.12 | Yes | no rank | | | species | 1630171 | click here |
| bifidobacterium sp. mrm 8.19 | Yes | no rank | | | species | 1630173 | click here |
| bifidobacterium sp. mrm 8.20 | Yes | no rank | | | species | 1630174 | click here |
| bifidobacterium sp. mrm 8.6 | Yes | no rank | | | species | 1630175 | click here |
| bifidobacterium sp. mrm 8.9 | Yes | no rank | | | species | 1630176 | click here |
| bifidobacterium sp. mrm 9.01 | Yes | no rank | | | species | 1630177 | click here |
| bifidobacterium sp. mrm 9.03 | Yes | no rank | | | species | 1630179 | click here |
| bifidobacterium sp. mrm 9.05 | Yes | no rank | | | species | 1630180 | click here |
| bifidobacterium sp. mrm 9.06 | Yes | no rank | | | species | 1630181 | click here |
| bifidobacterium sp. mrm 9.08 | Yes | no rank | | | species | 1630182 | click here |
| bifidobacterium sp. mrm 9.16 | Yes | no rank | | | species | 1630184 | click here |
| bifidobacterium sp. mrm 9.26 | Yes | no rank | | | species | 1630185 | click here |
| bifidobacterium sp. mrm_5/18 | Yes | no rank | | | species | 1453590 | click here |
| bifidobacterium sp. mrm_8/19 | Yes | no rank | | | species | 1453591 | click here |
| bifidobacterium stellenboschense | Yes | no rank | bacteria | bacteria | species | 762211 | click here |
| bifidobacterium tissieri | Yes | species | | | species | 1630162 | click here |
| bifidobacterium vansinderenii | Yes | species | | | species | 1984871 | click here |
| blastocystis hominis | Yes | species | eukaryota | plants | species | 12968 | click here |
| bordetella bronchiseptica | Yes | species | bacteria | bacteria | species | 518 | click here |
| brackiella oedipodis dsm 13743 | Yes | no rank | | | no rank | 1121118 | click here |
| brugia malayi | Yes | species | eukaryota | invertebrates | species | 6279 | click here |
| brugia pahangi | Yes | species | eukaryota | invertebrates | species | 6280 | click here |
| callithrix jacchus orthopoxvirus | Yes | no rank | viruses and viroids | viruses | no rank | 243803 | click here |
| callithrix penicillata papillomavirus type 1 | Yes | species | | | species | 2704503 | click here |
| callithrix penicillata papillomavirus type 2 | Yes | species | | | species | 2704504 | click here |
| callitrichine herpesvirus 3 | Yes | species | viruses and viroids | viruses | species | 106331 | click here |
| candida albicans | Yes | species | eukaryota | plants | species | 5476 | click here |
| cardiovirus a | Yes | species | | | species | 1821749 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| clostridium ventriculi | Yes | species | bacteria | bacteria | species | 1267 | click here |
| common marmoset adenovirus | Yes | species | | | species | 2301497 | click here |
| common marmoset foamy virus | Yes | no rank | viruses and viroids | viruses | no rank | 747493 | click here |
| cotton-top tamarin adenovirus | Yes | species | | | species | 2301501 | click here |
| cowpox virus | Yes | species | viruses and viroids | viruses | species | 10243 | click here |
| cryptococcus neoformans | Yes | species | eukaryota | plants | species | 5207 | click here |
| cryptosporidium hominis | Yes | species | eukaryota | invertebrates | species | 237895 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| dengue virus | Yes | species | viruses and viroids | viruses | species | 12637 | click here |
| dengue virus 2 | Yes | no rank | viruses and viroids | viruses | no rank | 11060 | click here |
| dipetalonema gracile | Yes | species | eukaryota | invertebrates | species | 221945 | click here |
| dipetalonema graciliformis | Yes | species | | invertebrates | species | 1766040 | click here |
| dipetalonema sp. gae-2017 | Yes | no rank | | | species | 1979298 | click here |
| eastern equine encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11021 | click here |
| ebola virus | Yes | subspecies | viruses and viroids | viruses | no rank | 1570291 | click here |
| echinococcus multilocularis | Yes | species | eukaryota | invertebrates | species | 6211 | click here |
| encephalomyocarditis virus | Yes | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| entamoeba chattoni | Yes | species | eukaryota | invertebrates | species | 110765 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| fasciola hepatica | Yes | species | eukaryota | invertebrates | species | 6192 | click here |
| flexispira rappini | Yes | species | bacteria | bacteria | species | 2354 | click here |
| francisella tularensis | Yes | species | bacteria | bacteria | species | 263 | click here |
| francisella tularensis subsp. holarctica | Yes | subspecies | bacteria | bacteria | subspecies | 119857 | click here |
| gbv-a-like agents | Yes | no rank | viruses and viroids | viruses | no rank | 339847 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| golden-headed lion tamarin adenovirus | Yes | species | | | species | 2301504 | click here |
| h1n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 114727 | click here |
| hantavirus sp. | Yes | species | viruses and viroids | viruses | species | 37741 | click here |