| acinetobacter schindleri | Yes | species | bacteria | bacteria | species | 108981 | click here |
| bifidobacterium animalis subsp. lactis | Yes | subspecies | bacteria | bacteria | subspecies | 302911 | click here |
| bifidobacterium dentium | Yes | species | bacteria | bacteria | species | 1689 | click here |
| bifidobacterium lemurum | Yes | species | | | species | 1603886 | click here |
| blastocystis hominis | Yes | species | eukaryota | plants | species | 12968 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| blastocystis sp. subtype 8 | Yes | no rank | eukaryota | plants | species | 429571 | click here |
| capillaria hepatica | Yes | species | | | species | 1239592 | click here |
| cardiovirus a | Yes | species | | | species | 1821749 | click here |
| clostridium ventriculi | Yes | species | bacteria | bacteria | species | 1267 | click here |
| echinococcus equinus | Yes | species | eukaryota | invertebrates | species | 519353 | click here |
| echinococcus granulosus | Yes | species | eukaryota | invertebrates | species | 6210 | click here |
| echinococcus multilocularis | No | species | eukaryota | invertebrates | species | 6211 | click here |
| echinococcus multilocularis | Yes | species | eukaryota | invertebrates | species | 6211 | click here |
| echinococcus oligarthrus | Yes | species | eukaryota | invertebrates | species | 6212 | click here |
| echinococcus ortleppi | Yes | species | eukaryota | invertebrates | species | 446560 | click here |
| echinococcus vogeli | Yes | species | eukaryota | invertebrates | species | 6213 | click here |
| encephalitozoon intestinalis | Yes | species | eukaryota | plants | species | 58839 | click here |
| encephalomyocarditis virus | Yes | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| entamoeba coli | Yes | species | eukaryota | invertebrates | species | 110766 | click here |
| entamoeba polecki | Yes | species | eukaryota | invertebrates | species | 110769 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| giardia intestinalis | No | species | eukaryota | invertebrates | species | 5741 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| human herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10298 | click here |
| hymenolepis diminuta | Yes | species | eukaryota | invertebrates | species | 6216 | click here |
| hymenolepis nana | Yes | species | eukaryota | invertebrates | species | 102285 | click here |
| lemur smacovirus | Yes | species | | | species | 1603069 | click here |
| leptospira interrogans serovar copenhageni | Yes | no rank | bacteria | bacteria | no rank | 44275 | click here |
| lesavirus 1 | Yes | species | | | species | 1603963 | click here |
| neobalantidium coli | Yes | species | eukaryota | invertebrates | species | 71585 | click here |
| ring tailer lemur adenovirus | Yes | species | | | species | 2301517 | click here |
| salmonella enterica | Yes | species | bacteria | bacteria | species | 28901 | click here |
| sarcocystis neurona | Yes | species | eukaryota | invertebrates | species | 42890 | click here |
| simian immunodeficiency virus | Yes | species | viruses and viroids | viruses | species | 11723 | click here |
| streptococcus lutetiensis | Yes | species | bacteria | bacteria | species | 150055 | click here |
| streptococcus pneumoniae | Yes | species | bacteria | bacteria | species | 1313 | click here |
| streptococcus sp. dd04 | Yes | no rank | | | species | 1776578 | click here |
| taenia crassiceps | No | species | eukaryota | invertebrates | species | 6207 | click here |
| taenia crassiceps | Yes | species | eukaryota | invertebrates | species | 6207 | click here |
| taenia martis | Yes | species | eukaryota | invertebrates | species | 159981 | click here |
| tetratrichomonas gallinarum | Yes | species | eukaryota | invertebrates | species | 5730 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichomitus sp. kata1 | Yes | no rank | | | species | 882544 | click here |
| trypanosoma cruzi | Yes | species | eukaryota | invertebrates | species | 5693 | click here |
| uncultured bacterium | Yes | no rank | bacteria | environmental samples | species | 77133 | click here |
| west nile virus | Yes | species | viruses and viroids | viruses | species | 11082 | click here |