| anaplasma phagocytophilum | No | species | bacteria | bacteria | species | 948 | click here | 
| aonchotheca erinacei | No | species |  |  | species | 1975701 | click here | 
| archaeopsylla erinacei | No | species | eukaryota | invertebrates | species | 48909 | click here | 
| archaeopsylla erinacei erinacei | No | subspecies |  |  | subspecies | 1658300 | click here | 
| arthroderma benhamiae | No | species | eukaryota | plants | species | 63400 | click here | 
| bartonella melophagi | No | species | bacteria | bacteria | species | 291176 | click here | 
| bartonella washoensis | No | species | bacteria | bacteria | species | 186739 | click here | 
| belerina virus | No | species |  |  | species | 2748342 | click here | 
| betacoronavirus erinaceus | No | species |  |  | species | 2720538 | click here | 
| betacoronavirus erinaceus/vmc/deu/2012 | No | no rank |  |  | no rank | 1385427 | click here | 
| betacoronavirus sp. | No | species |  |  | species | 1928434 | click here | 
| bhanja virus | No | species |  |  | species | 1213620 | click here | 
| bordetella bronchiseptica | No | species | bacteria | bacteria | species | 518 | click here | 
| borreliella afzelii | No | species | bacteria | bacteria | species | 29518 | click here | 
| borreliella bavariensis | No | species | bacteria | bacteria | species | 664662 | click here | 
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here | 
| borreliella spielmanii | No | species | bacteria | bacteria | species | 88916 | click here | 
| caparinia tripilis | No | species |  |  | species |  | click here | 
| capillaria aerophila | No | species |  |  | species | 1172388 | click here | 
| coxiella burnetii | No | species | bacteria | bacteria | species | 777 | click here | 
| crenosoma striatum | No | species | eukaryota | invertebrates | species | 699426 | click here | 
| cryptosporidium erinacei | No | species |  |  | species | 1429248 | click here | 
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here | 
| cryptosporidium sp. hedgehog/deu/2008 | No | no rank | eukaryota | invertebrates | species | 655746 | click here | 
| environmental samples | No |  |  | environmental samples | no rank | 333811 | click here | 
| environmental samples | No |  |  | environmental samples | no rank | 359183 | click here | 
| environmental samples | No |  |  |  | no rank | 1629145 | click here | 
| erinaceus europaeus papillomavirus 1 | No | serotype | viruses and viroids | viruses | serotype | 445217 | click here | 
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here | 
| eucoleus aerophilus | No | species |  |  | species | 1237089 | click here | 
| eucoleus sp. 1 apm-2017 | No | no rank |  |  | species | 1973252 | click here | 
| foot-and-mouth disease virus | No | species | viruses and viroids | viruses | species | 12110 | click here | 
| giardia intestinalis | No | species | eukaryota | invertebrates | species | 5741 | click here | 
| haemaphysalis erinacei | No | species |  |  | species | 1133424 | click here | 
| haemaphysalis punctata | No | species | eukaryota | invertebrates | species | 49204 | click here | 
| hedgehog arterivirus | No | species |  |  | species | 2810711 | click here | 
| hedgehog coronavirus 1 | No | species |  |  | species | 1965093 | click here | 
| hedgehog hepatovirus | No | species |  |  | species | 1745249 | click here | 
| hedgehog hepatovirus igel8erieur2014 | No | no rank |  |  | no rank | 1987144 | click here | 
| hedgehog herpesvirus | No | species |  |  | species | 2315400 | click here | 
| human herpesvirus 1 | No | species | viruses and viroids | viruses | species | 10298 | click here | 
| isthmiophora melis | No | species | eukaryota | invertebrates | species | 220796 | click here | 
| ixodes hexagonus | No | species | eukaryota | invertebrates | species | 34612 | click here | 
| leptospira alexanderi | No | species | bacteria | bacteria | species | 100053 | click here | 
| leptospira borgpetersenii serovar ballum | No | no rank | bacteria | bacteria | no rank | 280505 | click here | 
| leptospira interrogans | No | species | bacteria | bacteria | species | 173 | click here | 
| leptospira interrogans serovar pomona | No | no rank | bacteria | bacteria | no rank | 44276 | click here | 
| metathelazia multipapillata | No | species |  |  | species |  | click here | 
| middle east respiratory syndrome coronavirus | No | species | viruses and viroids | viruses | species | 1335626 | click here | 
| mycobacterium avium | No | species | bacteria | bacteria | species | 1764 | click here | 
| mycobacterium bovis | No | species | bacteria | bacteria | species | 1765 | click here | 
| mycobacterium marinum | No | species | bacteria | bacteria | species | 1781 | click here | 
| plagiorhynchus cylindraceus | No | species | eukaryota | invertebrates | species | 60539 | click here | 
| rabies virus | No | species | viruses and viroids | viruses | species | 11292 | click here | 
| rhipicephalus sanguineus | No | species | eukaryota | invertebrates | species | 34632 | click here | 
| rhipicephalus turanicus | No | species | eukaryota | invertebrates | species | 34633 | click here | 
| rickettsia felis | No | species | bacteria | bacteria | species | 42862 | click here | 
| rickettsia helvetica | No | species | bacteria | bacteria | species | 35789 | click here | 
| rickettsia massiliae | No | species | bacteria | bacteria | species | 35791 | click here | 
| salmonella enterica | No | species | bacteria | bacteria | species | 28901 | click here | 
| salmonella enterica subsp. enterica serovar enteritidis | No | no rank | bacteria | bacteria | no rank | 149539 | click here | 
| salmonella enterica subsp. enterica serovar typhimurium | No | no rank | bacteria | bacteria | no rank | 90371 | click here | 
| sarcoptes scabiei | No | species | eukaryota | invertebrates | species | 52283 | click here | 
| severe fever with thrombocytopenia syndrome virus | No | species | viruses and viroids | viruses | species | 1003835 | click here | 
| staphylococcus aureus | No | species | bacteria | bacteria | species | 1280 | click here | 
| streptococcus pyogenes | No | species | bacteria | bacteria | species | 1314 | click here | 
| tick-borne encephalitis virus | No | species | viruses and viroids | viruses | species | 11084 | click here | 
| toxoplasma gondii | No | species | eukaryota | invertebrates | species | 5811 | click here | 
| trichinella nativa | No | species | eukaryota | invertebrates | species | 6335 | click here | 
| trichophyton erinacei | No | species | eukaryota | plants | species | 523106 | click here | 
| trichophyton mentagrophytes | No | species | eukaryota | plants | species | 523103 | click here | 
| uncultured bartonella sp. | No | no rank | bacteria | environmental samples | species | 104108 | click here | 
| yersinia pseudotuberculosis | No | species | bacteria | bacteria | species | 633 | click here |