| african pygmy hedgehog adenovirus 1 | Yes | species | | | species | 2591409 | click here |
| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| aonchotheca erinacei | Yes | species | | | species | 1975701 | click here |
| aonchotheca putorii | Yes | species | | | species | 1647945 | click here |
| archaeopsylla erinacei | No | species | eukaryota | invertebrates | species | 48909 | click here |
| archaeopsylla erinacei | Yes | species | eukaryota | invertebrates | species | 48909 | click here |
| archaeopsylla erinacei erinacei | Yes | subspecies | | | subspecies | 1658300 | click here |
| arthroderma benhamiae | No | species | eukaryota | plants | species | 63400 | click here |
| arthroderma benhamiae | Yes | species | eukaryota | plants | species | 63400 | click here |
| arthroderma fulvum | No | species | eukaryota | plants | species | 63401 | click here |
| babesia microti | Yes | species | eukaryota | invertebrates | species | 5868 | click here |
| bartonella henselae | Yes | species | bacteria | bacteria | species | 38323 | click here |
| bartonella melophagi | Yes | species | bacteria | bacteria | species | 291176 | click here |
| bartonella tamiae | Yes | species | bacteria | bacteria | species | 373638 | click here |
| bartonella washoensis | Yes | species | bacteria | bacteria | species | 186739 | click here |
| belerina virus | Yes | species | | | species | 2748342 | click here |
| betacoronavirus erinaceus | Yes | species | | | species | 2720538 | click here |
| betacoronavirus erinaceus/vmc/deu/2012 | Yes | no rank | | | no rank | 1385427 | click here |
| betacoronavirus sp. | Yes | species | | | species | 1928434 | click here |
| bhanja virus | Yes | species | | | species | 1213620 | click here |
| bordetella bronchiseptica | Yes | species | bacteria | bacteria | species | 518 | click here |
| borreliella afzelii | Yes | species | bacteria | bacteria | species | 29518 | click here |
| borreliella bavariensis | Yes | species | bacteria | bacteria | species | 664662 | click here |
| borreliella burgdorferi | Yes | species | bacteria | bacteria | species | 139 | click here |
| borreliella spielmanii | Yes | species | bacteria | bacteria | species | 88916 | click here |
| byssochlamys spectabilis | No | species | eukaryota | plants | species | 264951 | click here |
| cadicivirus b | Yes | species | | | species | 2560366 | click here |
| candidatus ehrlichia shimanensis | Yes | subspecies | bacteria | bacteria | species | 179101 | click here |
| candidatus neoehrlichia mikurensis | Yes | species | bacteria | bacteria | species | 89586 | click here |
| canine picodicistrovirus | Yes | no rank | | | no rank | 1150861 | click here |
| caparinia sp. ad1647 | Yes | no rank | | | species | 1463547 | click here |
| caparinia tripilis | Yes | species | | | species | | click here |
| capillaria aerophila | Yes | species | | | species | 1172388 | click here |
| chandipura virus | Yes | species | viruses and viroids | viruses | species | 11272 | click here |
| chandipura virus ib an 9978 | No | | | | no rank | 1027469 | click here |
| chlamydia pneumoniae | Yes | species | bacteria | bacteria | species | 83558 | click here |
| coxiella burnetii | Yes | species | bacteria | bacteria | species | 777 | click here |
| coxiella-like endosymbiont | Yes | no rank | | | species | 1592897 | click here |
| crenosoma striatum | No | species | eukaryota | invertebrates | species | 699426 | click here |
| crenosoma striatum | Yes | species | eukaryota | invertebrates | species | 699426 | click here |
| crimean-congo hemorrhagic fever orthonairovirus | Yes | species | | | species | 1980519 | click here |
| cryptosporidium erinacei | Yes | species | | | species | 1429248 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. | No | species | eukaryota | invertebrates | species | 90962 | click here |
| cryptosporidium sp. hedgehog/deu/2008 | Yes | no rank | eukaryota | invertebrates | species | 655746 | click here |
| cryptosporidium sp. horse genotype | Yes | no rank | eukaryota | invertebrates | species | 564992 | click here |
| dermacentor sinicus | No | species | | | species | 1131252 | click here |
| ehrlichia ewingii | Yes | species | bacteria | bacteria | species | 947 | click here |
| enterocytozoon bieneusi | No | species | eukaryota | plants | species | 31281 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| erinaceus amurensis coronavirus | Yes | species | | | species | 2778965 | click here |
| erinaceus europaeus papillomavirus 1 | Yes | serotype | viruses and viroids | viruses | serotype | 445217 | click here |
| erinaceus hedgehog coronavirus hku31 | Yes | species | | | species | 2664184 | click here |
| erinaceus virus h14 | Yes | species | | | species | 2605762 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| eucoleus aerophilus | Yes | species | | | species | 1237089 | click here |
| eucoleus sp. 1 apm-2017 | Yes | no rank | | | species | 1973252 | click here |
| foot-and-mouth disease virus | Yes | species | viruses and viroids | viruses | species | 12110 | click here |
| giardia intestinalis | Yes | species | eukaryota | invertebrates | species | 5741 | click here |
| haemaphysalis erinacei | No | species | | | species | 1133424 | click here |
| haemaphysalis erinacei | Yes | species | | | species | 1133424 | click here |
| haemaphysalis flava | No | species | eukaryota | invertebrates | species | 181088 | click here |
| haemaphysalis punctata | Yes | species | eukaryota | invertebrates | species | 49204 | click here |
| haemaphysalis spinulosa | Yes | species | | | species | 1506265 | click here |
| hedgehog arterivirus | Yes | species | | | species | 2810711 | click here |
| hedgehog coronavirus 1 | Yes | species | | | species | 1965093 | click here |
| hedgehog dicipivirus | Yes | species | | | species | 2041149 | click here |
| hedgehog hepatovirus | Yes | species | | | species | 1745249 | click here |
| hedgehog hepatovirus igel8erieur2014 | Yes | no rank | | | no rank | 1987144 | click here |
| hedgehog herpesvirus | Yes | species | | | species | 2315400 | click here |
| hemolivia mauritanica | Yes | species | | | species | 1549747 | click here |
| hepatozoon sp. | Yes | species | | | species | 1484059 | click here |
| histoplasma capsulatum | Yes | species | eukaryota | plants | species | 5037 | click here |
| human herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 10298 | click here |
| hyalomma marginatum | No | species | eukaryota | invertebrates | species | 34627 | click here |
| hyalomma scupense | No | species | | | species | 1260755 | click here |
| hymenolepis erinacei | Yes | species | | | species | 1963778 | click here |
| isthmiophora melis | Yes | species | eukaryota | invertebrates | species | 220796 | click here |
| ixodes hexagonus | No | species | eukaryota | invertebrates | species | 34612 | click here |
| ixodes hexagonus | Yes | species | eukaryota | invertebrates | species | 34612 | click here |
| ixodes holocyclus | Yes | species | eukaryota | invertebrates | species | 65647 | click here |
| klebsiella michiganensis | No | species | | | species | 1134687 | click here |
| klebsiella pneumoniae | No | species | bacteria | bacteria | species | 573 | click here |
| leishmania major | Yes | species | eukaryota | invertebrates | species | 5664 | click here |
| leptospira alexanderi | Yes | species | bacteria | bacteria | species | 100053 | click here |
| leptospira borgpetersenii serovar ballum | Yes | no rank | bacteria | bacteria | no rank | 280505 | click here |
| leptospira interrogans | Yes | species | bacteria | bacteria | species | 173 | click here |
| leptospira interrogans serovar copenhageni | No | no rank | bacteria | bacteria | no rank | 44275 | click here |
| leptospira interrogans serovar pomona | Yes | no rank | bacteria | bacteria | no rank | 44276 | click here |
| macracanthorhynchus ingens | No | species | eukaryota | invertebrates | species | 60534 | click here |
| macracanthorhynchus ingens | Yes | species | eukaryota | invertebrates | species | 60534 | click here |
| metathelazia multipapillata | Yes | species | | | species | | click here |
| microsporum gypseum | No | species | eukaryota | plants | species | 63402 | click here |
| middle east respiratory syndrome coronavirus | Yes | species | viruses and viroids | viruses | species | 1335626 | click here |
| moniliformis moniliformis | Yes | species | eukaryota | invertebrates | species | 10237 | click here |
| moniliformis sp. rpe-2016 | Yes | no rank | | | species | 1844540 | click here |