| akkermansia sp. phil8 | No | no rank | | | species | 1929996 | click here |
| bacilli bacterium phil2 | No | species | | | species | 1958816 | click here |
| bacteroidales bacterium phil12 | No | no rank | | | species | 1958820 | click here |
| bacteroidales bacterium phil6 | No | no rank | | | species | 1958819 | click here |
| bacteroides sp. phil13 | No | no rank | | | species | 1929999 | click here |
| bothriocroton sp. cj-2015 | No | no rank | | | species | 1602976 | click here |
| campylobacter sp. wb1 | No | no rank | bacteria | bacteria | species | 281990 | click here |
| chlamydia pecorum | Yes | species | bacteria | bacteria | species | 85991 | click here |
| christensenellaceae bacterium phil1 | No | no rank | | | species | 1930012 | click here |
| christensenellaceae bacterium phil10 | No | no rank | | | species | 1930014 | click here |
| christensenellaceae bacterium phil7 | No | species | | | species | 1930013 | click here |
| cryptosporidium cf. fayeri | No | no rank | | | species | 1856837 | click here |
| cryptosporidium cf. ubiquitum | No | no rank | | | species | 1856838 | click here |
| cryptosporidium fayeri | No | species | eukaryota | invertebrates | species | 582425 | click here |
| cryptosporidium fayeri | Yes | species | eukaryota | invertebrates | species | 582425 | click here |
| cryptosporidium ubiquitum | Yes | species | eukaryota | invertebrates | species | 857276 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| fasciola hepatica | Yes | species | eukaryota | invertebrates | species | 6192 | click here |
| giardia intestinalis | No | species | eukaryota | invertebrates | species | 5741 | click here |
| helicobacter sp. wb1f | No | no rank | bacteria | bacteria | species | 281986 | click here |
| helicobacter sp. wb2f | No | no rank | bacteria | bacteria | species | 281987 | click here |
| ixodes cornuatus | No | species | eukaryota | invertebrates | species | 179425 | click here |
| lachnospiraceae bacterium phil5 | No | no rank | | | species | 1958817 | click here |
| leptospira interrogans | Yes | species | bacteria | bacteria | species | 173 | click here |
| macropodid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 137443 | click here |
| macropodid herpesvirus 2 | Yes | species | viruses and viroids | viruses | species | 83440 | click here |
| methanocorpusculaceae archaeon phil4 | No | no rank | | | species | 1930022 | click here |
| mollicutes bacterium phil14 | No | no rank | | | species | 1930023 | click here |
| oesophagostomoides longispicularis | Yes | species | eukaryota | invertebrates | species | 53348 | click here |
| phascolotaenia comani | Yes | species | | | species | 1117279 | click here |
| progamotaenia diaphana | Yes | species | eukaryota | invertebrates | species | 428657 | click here |
| progamotaenia festiva | Yes | species | eukaryota | invertebrates | species | 428656 | click here |
| ross river virus | Yes | species | viruses and viroids | viruses | species | 11029 | click here |
| ruminococcus sp. phil11 | No | no rank | | | species | 1929998 | click here |
| ruminococcus sp. phil15 | No | no rank | | | species | 1930000 | click here |
| sarcoptes scabiei | No | species | eukaryota | invertebrates | species | 52283 | click here |
| sarcoptes scabiei | Yes | species | eukaryota | invertebrates | species | 52283 | click here |
| sarcoptes scabiei type wombati | Yes | | eukaryota | invertebrates | no rank | 198574 | click here |
| sarcoptes sp. | No | species | eukaryota | invertebrates | species | 92879 | click here |
| sphaerochaeta sp. phil3 | No | no rank | | | species | 1930011 | click here |
| succinivibrio sp. phil9 | No | no rank | | | species | 1929997 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trypanosoma sp. | Yes | species | eukaryota | invertebrates | species | 5696 | click here |
| trypanosoma sp. aai | Yes | no rank | eukaryota | invertebrates | species | 260725 | click here |
| trypanosoma sp. aem | Yes | no rank | eukaryota | invertebrates | species | 260726 | click here |
| trypanosoma sp. aex | Yes | no rank | eukaryota | invertebrates | species | 260727 | click here |
| trypanosoma sp. ahb | Yes | no rank | eukaryota | invertebrates | species | 260728 | click here |
| trypanosoma sp. mvom/au/97/h26 | Yes | no rank | eukaryota | invertebrates | species | 98368 | click here |
| trypanosoma sp. wombat aap | Yes | no rank | eukaryota | invertebrates | species | 260180 | click here |
| vombatid gammaherpesvirus 1 | Yes | species | | | species | 2052651 | click here |