| aspergillus fumigatus | Yes | species | eukaryota | plants | species | 746128 | click here | 
| aves polyomavirus 1 | Yes | species |   |   | species | 1891747 | click here | 
| avian bornavirus | Yes | species | viruses and viroids | viruses | species | 675389 | click here | 
| avian bornavirus 2 | Yes | no rank | viruses and viroids | viruses | species | 555867 | click here | 
| avian bornavirus 3 | Yes | no rank | viruses and viroids | viruses | species | 555868 | click here | 
| avian bornavirus 4 | Yes | species | viruses and viroids | viruses | species | 555869 | click here | 
| avian metaavulavirus 2 | Yes | species |   |   | species | 2560313 | click here | 
| avian orthoavulavirus 1 | Yes | species |   |   | species | 2560319 | click here | 
| avipoxvirus betim 1 | Yes | species |   |   | species | 1756707 | click here | 
| beak and feather disease virus | Yes | species | viruses and viroids | viruses | species | 77856 | click here | 
| betacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 694003 | click here | 
| borna disease virus | Yes | species | viruses and viroids | viruses | species | 12455 | click here | 
| chlamydia psittaci | Yes | species | bacteria | bacteria | species | 83554 | click here | 
| chlamydia psittaci mat116 | Yes | no rank | bacteria | bacteria | no rank | 500464 | click here | 
| cryptococcus neoformans | Yes | species | eukaryota | plants | species | 5207 | click here | 
| cryptosporidium baileyi | Yes | species | eukaryota | invertebrates | species | 27987 | click here | 
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here | 
| haemoproteus sp. | Yes | species | eukaryota | invertebrates | species | 191679 | click here | 
| infectious bronchitis virus | Yes | no rank | viruses and viroids | viruses | no rank | 11120 | click here | 
| klebsiella pneumoniae | Yes | species | bacteria | bacteria | species | 573 | click here | 
| paratanaisia bragai | Yes | species |   |   | species | 1308820 | click here | 
| parrot bornavirus 2 | Yes | no rank |   |   | no rank | 1548715 | click here | 
| parrot bornavirus 4 | Yes | no rank |   |   | no rank | 1548718 | click here | 
| parrot bornavirus 5 | Yes | no rank |   |   | no rank | 1884879 | click here | 
| pheasant coronavirus | Yes | no rank | viruses and viroids | viruses | no rank | 258781 | click here | 
| psittacid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 50294 | click here | 
| salmonella enterica | Yes | species | bacteria | bacteria | species | 28901 | click here | 
| salmonella enterica subsp. enterica serovar typhimurium | Yes | no rank | bacteria | bacteria | no rank | 90371 | click here | 
| turkey coronavirus | Yes | no rank | viruses and viroids | viruses | no rank | 11152 | click here | 
| uncultured bacterium | Yes | no rank | bacteria | environmental samples | species | 77133 | click here | 
| uncultured coxiella sp. | Yes | no rank | bacteria | environmental samples | species | 189542 | click here | 
| volucribacter psittacicida | Yes | species | bacteria | bacteria | species | 203482 | click here | 
| west nile virus | Yes | species | viruses and viroids | viruses | species | 11082 | click here |